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Performant barcode decoding for herbarium specimen images using vector‐assisted region proposals (VARP)
PREMISE: The scale and associated costs of herbarium digitization make process automation appealing. One such process for many workflows is the association of specimen image files with barcode values stored with the specimen. Here, an innovation is presented that improves the speed and accuracy of d...
Autores principales: | , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
John Wiley and Sons Inc.
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8202828/ https://www.ncbi.nlm.nih.gov/pubmed/34141497 http://dx.doi.org/10.1002/aps3.11436 |
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author | Powell, Caleb Shaw, Joey |
author_facet | Powell, Caleb Shaw, Joey |
author_sort | Powell, Caleb |
collection | PubMed |
description | PREMISE: The scale and associated costs of herbarium digitization make process automation appealing. One such process for many workflows is the association of specimen image files with barcode values stored with the specimen. Here, an innovation is presented that improves the speed and accuracy of decoding barcodes from specimen images. METHODS AND RESULTS: Geometric features common in barcodes are used to identify the regions of specimen images that are likely to contain a barcode. The proposed regions are then combined into a significantly reduced composite image that is decoded using traditional barcode reading libraries. Tested against existing solutions, this method demonstrated the highest success rate (96.5%) and the second fastest processing time (617 ms). CONCLUSIONS: This method was developed to support a larger effort to automate specimen image post‐processing in real‐time, highlighting the importance of execution time. Although initially designed for herbarium digitization, this method may be useful for other high‐resolution applications. |
format | Online Article Text |
id | pubmed-8202828 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | John Wiley and Sons Inc. |
record_format | MEDLINE/PubMed |
spelling | pubmed-82028282021-06-16 Performant barcode decoding for herbarium specimen images using vector‐assisted region proposals (VARP) Powell, Caleb Shaw, Joey Appl Plant Sci Protocol Notes PREMISE: The scale and associated costs of herbarium digitization make process automation appealing. One such process for many workflows is the association of specimen image files with barcode values stored with the specimen. Here, an innovation is presented that improves the speed and accuracy of decoding barcodes from specimen images. METHODS AND RESULTS: Geometric features common in barcodes are used to identify the regions of specimen images that are likely to contain a barcode. The proposed regions are then combined into a significantly reduced composite image that is decoded using traditional barcode reading libraries. Tested against existing solutions, this method demonstrated the highest success rate (96.5%) and the second fastest processing time (617 ms). CONCLUSIONS: This method was developed to support a larger effort to automate specimen image post‐processing in real‐time, highlighting the importance of execution time. Although initially designed for herbarium digitization, this method may be useful for other high‐resolution applications. John Wiley and Sons Inc. 2021-06-03 /pmc/articles/PMC8202828/ /pubmed/34141497 http://dx.doi.org/10.1002/aps3.11436 Text en © 2021 Powell and Shaw Applications in Plant Sciences published by Wiley Periodicals LLC on behalf of the Botanical Society of America https://creativecommons.org/licenses/by/4.0/This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Protocol Notes Powell, Caleb Shaw, Joey Performant barcode decoding for herbarium specimen images using vector‐assisted region proposals (VARP) |
title | Performant barcode decoding for herbarium specimen images using vector‐assisted region proposals (VARP) |
title_full | Performant barcode decoding for herbarium specimen images using vector‐assisted region proposals (VARP) |
title_fullStr | Performant barcode decoding for herbarium specimen images using vector‐assisted region proposals (VARP) |
title_full_unstemmed | Performant barcode decoding for herbarium specimen images using vector‐assisted region proposals (VARP) |
title_short | Performant barcode decoding for herbarium specimen images using vector‐assisted region proposals (VARP) |
title_sort | performant barcode decoding for herbarium specimen images using vector‐assisted region proposals (varp) |
topic | Protocol Notes |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8202828/ https://www.ncbi.nlm.nih.gov/pubmed/34141497 http://dx.doi.org/10.1002/aps3.11436 |
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