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Performant barcode decoding for herbarium specimen images using vector‐assisted region proposals (VARP)

PREMISE: The scale and associated costs of herbarium digitization make process automation appealing. One such process for many workflows is the association of specimen image files with barcode values stored with the specimen. Here, an innovation is presented that improves the speed and accuracy of d...

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Detalles Bibliográficos
Autores principales: Powell, Caleb, Shaw, Joey
Formato: Online Artículo Texto
Lenguaje:English
Publicado: John Wiley and Sons Inc. 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8202828/
https://www.ncbi.nlm.nih.gov/pubmed/34141497
http://dx.doi.org/10.1002/aps3.11436
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author Powell, Caleb
Shaw, Joey
author_facet Powell, Caleb
Shaw, Joey
author_sort Powell, Caleb
collection PubMed
description PREMISE: The scale and associated costs of herbarium digitization make process automation appealing. One such process for many workflows is the association of specimen image files with barcode values stored with the specimen. Here, an innovation is presented that improves the speed and accuracy of decoding barcodes from specimen images. METHODS AND RESULTS: Geometric features common in barcodes are used to identify the regions of specimen images that are likely to contain a barcode. The proposed regions are then combined into a significantly reduced composite image that is decoded using traditional barcode reading libraries. Tested against existing solutions, this method demonstrated the highest success rate (96.5%) and the second fastest processing time (617 ms). CONCLUSIONS: This method was developed to support a larger effort to automate specimen image post‐processing in real‐time, highlighting the importance of execution time. Although initially designed for herbarium digitization, this method may be useful for other high‐resolution applications.
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spelling pubmed-82028282021-06-16 Performant barcode decoding for herbarium specimen images using vector‐assisted region proposals (VARP) Powell, Caleb Shaw, Joey Appl Plant Sci Protocol Notes PREMISE: The scale and associated costs of herbarium digitization make process automation appealing. One such process for many workflows is the association of specimen image files with barcode values stored with the specimen. Here, an innovation is presented that improves the speed and accuracy of decoding barcodes from specimen images. METHODS AND RESULTS: Geometric features common in barcodes are used to identify the regions of specimen images that are likely to contain a barcode. The proposed regions are then combined into a significantly reduced composite image that is decoded using traditional barcode reading libraries. Tested against existing solutions, this method demonstrated the highest success rate (96.5%) and the second fastest processing time (617 ms). CONCLUSIONS: This method was developed to support a larger effort to automate specimen image post‐processing in real‐time, highlighting the importance of execution time. Although initially designed for herbarium digitization, this method may be useful for other high‐resolution applications. John Wiley and Sons Inc. 2021-06-03 /pmc/articles/PMC8202828/ /pubmed/34141497 http://dx.doi.org/10.1002/aps3.11436 Text en © 2021 Powell and Shaw Applications in Plant Sciences published by Wiley Periodicals LLC on behalf of the Botanical Society of America https://creativecommons.org/licenses/by/4.0/This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited.
spellingShingle Protocol Notes
Powell, Caleb
Shaw, Joey
Performant barcode decoding for herbarium specimen images using vector‐assisted region proposals (VARP)
title Performant barcode decoding for herbarium specimen images using vector‐assisted region proposals (VARP)
title_full Performant barcode decoding for herbarium specimen images using vector‐assisted region proposals (VARP)
title_fullStr Performant barcode decoding for herbarium specimen images using vector‐assisted region proposals (VARP)
title_full_unstemmed Performant barcode decoding for herbarium specimen images using vector‐assisted region proposals (VARP)
title_short Performant barcode decoding for herbarium specimen images using vector‐assisted region proposals (VARP)
title_sort performant barcode decoding for herbarium specimen images using vector‐assisted region proposals (varp)
topic Protocol Notes
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8202828/
https://www.ncbi.nlm.nih.gov/pubmed/34141497
http://dx.doi.org/10.1002/aps3.11436
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