The impact of sequencing depth on the inferred taxonomic composition and AMR gene content of metagenomic samples

BACKGROUND: Shotgun metagenomics is increasingly used to characterise microbial communities, particularly for the investigation of antimicrobial resistance (AMR) in different animal and environmental contexts. There are many different approaches for inferring the taxonomic composition and AMR gene c...

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Detalles Bibliográficos
Autores principales: Gweon, H. Soon, Shaw, Liam P., Swann, Jeremy, De Maio, Nicola, AbuOun, Manal, Niehus, Rene, Hubbard, Alasdair T. M., Bowes, Mike J., Bailey, Mark J., Peto, Tim E. A., Hoosdally, Sarah J., Walker, A. Sarah, Sebra, Robert P., Crook, Derrick W., Anjum, Muna F., Read, Daniel S., Stoesser, Nicole
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2019
Materias:
Research Article
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8204541/
https://www.ncbi.nlm.nih.gov/pubmed/33902704
http://dx.doi.org/10.1186/s40793-019-0347-1

Internet

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8204541/
https://www.ncbi.nlm.nih.gov/pubmed/33902704
http://dx.doi.org/10.1186/s40793-019-0347-1

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