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Non-bonded force field model with advanced restrained electrostatic potential charges (RESP2)
The restrained electrostatic potential (RESP) approach is a highly regarded and widely used method of assigning partial charges to molecules for simulations. RESP uses a quantum-mechanical method that yields fortuitous overpolarization and thereby accounts only approximately for self-polarization of...
Autores principales: | , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group UK
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8204736/ https://www.ncbi.nlm.nih.gov/pubmed/34136662 http://dx.doi.org/10.1038/s42004-020-0291-4 |
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author | Schauperl, Michael Nerenberg, Paul S. Jang, Hyesu Wang, Lee-Ping Bayly, Christopher I. Mobley, David L. Gilson, Michael K. |
author_facet | Schauperl, Michael Nerenberg, Paul S. Jang, Hyesu Wang, Lee-Ping Bayly, Christopher I. Mobley, David L. Gilson, Michael K. |
author_sort | Schauperl, Michael |
collection | PubMed |
description | The restrained electrostatic potential (RESP) approach is a highly regarded and widely used method of assigning partial charges to molecules for simulations. RESP uses a quantum-mechanical method that yields fortuitous overpolarization and thereby accounts only approximately for self-polarization of molecules in the condensed phase. Here we present RESP2, a next generation of this approach, where the polarity of the charges is tuned by a parameter, δ, which scales the contributions from gas- and aqueous-phase calculations. When the complete non-bonded force field model, including Lennard-Jones parameters, is optimized to liquid properties, improved accuracy is achieved, even with this reduced set of five Lennard-Jones types. We argue that RESP2 with δ ≈ 0.6 (60% aqueous, 40% gas-phase charges) is an accurate and robust method of generating partial charges, and that a small set of Lennard-Jones types is a good starting point for a systematic re-optimization of this important non-bonded term. |
format | Online Article Text |
id | pubmed-8204736 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-82047362021-06-15 Non-bonded force field model with advanced restrained electrostatic potential charges (RESP2) Schauperl, Michael Nerenberg, Paul S. Jang, Hyesu Wang, Lee-Ping Bayly, Christopher I. Mobley, David L. Gilson, Michael K. Commun Chem Article The restrained electrostatic potential (RESP) approach is a highly regarded and widely used method of assigning partial charges to molecules for simulations. RESP uses a quantum-mechanical method that yields fortuitous overpolarization and thereby accounts only approximately for self-polarization of molecules in the condensed phase. Here we present RESP2, a next generation of this approach, where the polarity of the charges is tuned by a parameter, δ, which scales the contributions from gas- and aqueous-phase calculations. When the complete non-bonded force field model, including Lennard-Jones parameters, is optimized to liquid properties, improved accuracy is achieved, even with this reduced set of five Lennard-Jones types. We argue that RESP2 with δ ≈ 0.6 (60% aqueous, 40% gas-phase charges) is an accurate and robust method of generating partial charges, and that a small set of Lennard-Jones types is a good starting point for a systematic re-optimization of this important non-bonded term. Nature Publishing Group UK 2020-04-03 /pmc/articles/PMC8204736/ /pubmed/34136662 http://dx.doi.org/10.1038/s42004-020-0291-4 Text en © The Author(s) 2020 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . |
spellingShingle | Article Schauperl, Michael Nerenberg, Paul S. Jang, Hyesu Wang, Lee-Ping Bayly, Christopher I. Mobley, David L. Gilson, Michael K. Non-bonded force field model with advanced restrained electrostatic potential charges (RESP2) |
title | Non-bonded force field model with advanced restrained electrostatic potential charges (RESP2) |
title_full | Non-bonded force field model with advanced restrained electrostatic potential charges (RESP2) |
title_fullStr | Non-bonded force field model with advanced restrained electrostatic potential charges (RESP2) |
title_full_unstemmed | Non-bonded force field model with advanced restrained electrostatic potential charges (RESP2) |
title_short | Non-bonded force field model with advanced restrained electrostatic potential charges (RESP2) |
title_sort | non-bonded force field model with advanced restrained electrostatic potential charges (resp2) |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8204736/ https://www.ncbi.nlm.nih.gov/pubmed/34136662 http://dx.doi.org/10.1038/s42004-020-0291-4 |
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