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The complete mitochondrial genome sequence of Fragaria orientalis (Rosaceae)
Fragaria orientalis Lozinsk. is valuable germplasm material for cross breeding in Fragaria. In this study, we assembled the complete mitochondrial genome of F. orientalis using a combination of Illumina data and Nanopore data. The mitochondrial genome was 275,143 bp in length, including 29 protein-c...
| Autores principales: | , , , , , , , , , , , |
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| Formato: | Online Artículo Texto |
| Lenguaje: | English |
| Publicado: |
Taylor & Francis
2021
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| Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8204990/ https://www.ncbi.nlm.nih.gov/pubmed/34179477 http://dx.doi.org/10.1080/23802359.2021.1920498 |
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| author | Liu, Hua-Bo Sun, Jian Sun, Rui Li, Shuang-Tao Zhong, Chuan-Fei Dong, Jing Chang, Lin-Lin Wang, Gui-Xia Zhang, Hong-Li Wei, Yong-Qing Zhang, Yun-Tao Gao, Yong-Shun |
| author_facet | Liu, Hua-Bo Sun, Jian Sun, Rui Li, Shuang-Tao Zhong, Chuan-Fei Dong, Jing Chang, Lin-Lin Wang, Gui-Xia Zhang, Hong-Li Wei, Yong-Qing Zhang, Yun-Tao Gao, Yong-Shun |
| author_sort | Liu, Hua-Bo |
| collection | PubMed |
| description | Fragaria orientalis Lozinsk. is valuable germplasm material for cross breeding in Fragaria. In this study, we assembled the complete mitochondrial genome of F. orientalis using a combination of Illumina data and Nanopore data. The mitochondrial genome was 275,143 bp in length, including 29 protein-coding genes, 20 tRNA genes, and three rRNA genes, with a total GC content 45.23%. Seven protein-coding genes contained introns, and three were trans-spliced. Phylogenetic analysis indicated that F. orientalis is making a sister clade to the Amygdaloideae species. The complete mitochondrial genome of F. orientalis reported in this study will improve our understanding of Fragaria evolution. |
| format | Online Article Text |
| id | pubmed-8204990 |
| institution | National Center for Biotechnology Information |
| language | English |
| publishDate | 2021 |
| publisher | Taylor & Francis |
| record_format | MEDLINE/PubMed |
| spelling | pubmed-82049902021-06-24 The complete mitochondrial genome sequence of Fragaria orientalis (Rosaceae) Liu, Hua-Bo Sun, Jian Sun, Rui Li, Shuang-Tao Zhong, Chuan-Fei Dong, Jing Chang, Lin-Lin Wang, Gui-Xia Zhang, Hong-Li Wei, Yong-Qing Zhang, Yun-Tao Gao, Yong-Shun Mitochondrial DNA B Resour Mitogenome Announcement Fragaria orientalis Lozinsk. is valuable germplasm material for cross breeding in Fragaria. In this study, we assembled the complete mitochondrial genome of F. orientalis using a combination of Illumina data and Nanopore data. The mitochondrial genome was 275,143 bp in length, including 29 protein-coding genes, 20 tRNA genes, and three rRNA genes, with a total GC content 45.23%. Seven protein-coding genes contained introns, and three were trans-spliced. Phylogenetic analysis indicated that F. orientalis is making a sister clade to the Amygdaloideae species. The complete mitochondrial genome of F. orientalis reported in this study will improve our understanding of Fragaria evolution. Taylor & Francis 2021-06-14 /pmc/articles/PMC8204990/ /pubmed/34179477 http://dx.doi.org/10.1080/23802359.2021.1920498 Text en © 2021 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. |
| spellingShingle | Mitogenome Announcement Liu, Hua-Bo Sun, Jian Sun, Rui Li, Shuang-Tao Zhong, Chuan-Fei Dong, Jing Chang, Lin-Lin Wang, Gui-Xia Zhang, Hong-Li Wei, Yong-Qing Zhang, Yun-Tao Gao, Yong-Shun The complete mitochondrial genome sequence of Fragaria orientalis (Rosaceae) |
| title | The complete mitochondrial genome sequence of Fragaria orientalis (Rosaceae) |
| title_full | The complete mitochondrial genome sequence of Fragaria orientalis (Rosaceae) |
| title_fullStr | The complete mitochondrial genome sequence of Fragaria orientalis (Rosaceae) |
| title_full_unstemmed | The complete mitochondrial genome sequence of Fragaria orientalis (Rosaceae) |
| title_short | The complete mitochondrial genome sequence of Fragaria orientalis (Rosaceae) |
| title_sort | complete mitochondrial genome sequence of fragaria orientalis (rosaceae) |
| topic | Mitogenome Announcement |
| url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8204990/ https://www.ncbi.nlm.nih.gov/pubmed/34179477 http://dx.doi.org/10.1080/23802359.2021.1920498 |
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