The complete chloroplast genome sequence of Casearia glomerata Roxb. (Malpighiales; Salicaceae) from Fujian, China

Casearia glomerata Roxb. is classified in Salicaceae and has a high economic value. Herein, we report the complete chloroplast (cp) genome of C. glomerata using Illumina sequence data. The cp genome is 156,809 bp in length and contains a large single-copy (LSC) region of 84,888 bp and a small single...

Descripción completa

Detalles Bibliográficos
Autores principales: Huang, Hui, Xie, Yanqiu, Luo, Site, Zhang, Linting, Deng, Chuanyuan, Chen, Zujian
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2021
Materias:
Mitogenome Announcement
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8205027/
https://www.ncbi.nlm.nih.gov/pubmed/34179472
http://dx.doi.org/10.1080/23802359.2021.1936235
_version_ 1783708427952848896
author Huang, Hui
Xie, Yanqiu
Luo, Site
Zhang, Linting
Deng, Chuanyuan
Chen, Zujian
author_facet Huang, Hui
Xie, Yanqiu
Luo, Site
Zhang, Linting
Deng, Chuanyuan
Chen, Zujian
author_sort Huang, Hui
collection PubMed
description Casearia glomerata Roxb. is classified in Salicaceae and has a high economic value. Herein, we report the complete chloroplast (cp) genome of C. glomerata using Illumina sequence data. The cp genome is 156,809 bp in length and contains a large single-copy (LSC) region of 84,888 bp and a small single-copy (SSC) region of 17,039 bp separated by two inverted repeat (IR) regions of 27,441 bp each. It contained a total of 123 genes, with an overall GC content of 36.81%. The phylogenetic analysis showed that C. glomerata is closely related to Casearia velutina. This study provides important sequence information for species identification and its phylogenetic relationship in the Salicaceae
format Online
Article
Text
id pubmed-8205027
institution National Center for Biotechnology Information
language English
publishDate 2021
publisher Taylor & Francis
record_format MEDLINE/PubMed
spelling pubmed-82050272021-06-24 The complete chloroplast genome sequence of Casearia glomerata Roxb. (Malpighiales; Salicaceae) from Fujian, China Huang, Hui Xie, Yanqiu Luo, Site Zhang, Linting Deng, Chuanyuan Chen, Zujian Mitochondrial DNA B Resour Mitogenome Announcement Casearia glomerata Roxb. is classified in Salicaceae and has a high economic value. Herein, we report the complete chloroplast (cp) genome of C. glomerata using Illumina sequence data. The cp genome is 156,809 bp in length and contains a large single-copy (LSC) region of 84,888 bp and a small single-copy (SSC) region of 17,039 bp separated by two inverted repeat (IR) regions of 27,441 bp each. It contained a total of 123 genes, with an overall GC content of 36.81%. The phylogenetic analysis showed that C. glomerata is closely related to Casearia velutina. This study provides important sequence information for species identification and its phylogenetic relationship in the Salicaceae Taylor & Francis 2021-06-14 /pmc/articles/PMC8205027/ /pubmed/34179472 http://dx.doi.org/10.1080/23802359.2021.1936235 Text en © 2021 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Mitogenome Announcement
Huang, Hui
Xie, Yanqiu
Luo, Site
Zhang, Linting
Deng, Chuanyuan
Chen, Zujian
The complete chloroplast genome sequence of Casearia glomerata Roxb. (Malpighiales; Salicaceae) from Fujian, China
title The complete chloroplast genome sequence of Casearia glomerata Roxb. (Malpighiales; Salicaceae) from Fujian, China
title_full The complete chloroplast genome sequence of Casearia glomerata Roxb. (Malpighiales; Salicaceae) from Fujian, China
title_fullStr The complete chloroplast genome sequence of Casearia glomerata Roxb. (Malpighiales; Salicaceae) from Fujian, China
title_full_unstemmed The complete chloroplast genome sequence of Casearia glomerata Roxb. (Malpighiales; Salicaceae) from Fujian, China
title_short The complete chloroplast genome sequence of Casearia glomerata Roxb. (Malpighiales; Salicaceae) from Fujian, China
title_sort complete chloroplast genome sequence of casearia glomerata roxb. (malpighiales; salicaceae) from fujian, china
topic Mitogenome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8205027/
https://www.ncbi.nlm.nih.gov/pubmed/34179472
http://dx.doi.org/10.1080/23802359.2021.1936235
work_keys_str_mv AT huanghui thecompletechloroplastgenomesequenceofcaseariaglomerataroxbmalpighialessalicaceaefromfujianchina
AT xieyanqiu thecompletechloroplastgenomesequenceofcaseariaglomerataroxbmalpighialessalicaceaefromfujianchina
AT luosite thecompletechloroplastgenomesequenceofcaseariaglomerataroxbmalpighialessalicaceaefromfujianchina
AT zhanglinting thecompletechloroplastgenomesequenceofcaseariaglomerataroxbmalpighialessalicaceaefromfujianchina
AT dengchuanyuan thecompletechloroplastgenomesequenceofcaseariaglomerataroxbmalpighialessalicaceaefromfujianchina
AT chenzujian thecompletechloroplastgenomesequenceofcaseariaglomerataroxbmalpighialessalicaceaefromfujianchina
AT huanghui completechloroplastgenomesequenceofcaseariaglomerataroxbmalpighialessalicaceaefromfujianchina
AT xieyanqiu completechloroplastgenomesequenceofcaseariaglomerataroxbmalpighialessalicaceaefromfujianchina
AT luosite completechloroplastgenomesequenceofcaseariaglomerataroxbmalpighialessalicaceaefromfujianchina
AT zhanglinting completechloroplastgenomesequenceofcaseariaglomerataroxbmalpighialessalicaceaefromfujianchina
AT dengchuanyuan completechloroplastgenomesequenceofcaseariaglomerataroxbmalpighialessalicaceaefromfujianchina
AT chenzujian completechloroplastgenomesequenceofcaseariaglomerataroxbmalpighialessalicaceaefromfujianchina

Ejemplares similares