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Characterization of the complete chloroplast genome of Sanicula rubriflora F. Schmidt ex Maxim
Sanicula rubriflora refers to a kind of edible wild herbs, which possesses reputed medicinal value. Chloroplasts (cp) is essential organelle in plant cells and has a genome that can be inherited autonomously. The complete chloroplast genome of S. rubriflora was assemble and annotated in the present...
Autores principales: | , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Taylor & Francis
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8205028/ https://www.ncbi.nlm.nih.gov/pubmed/34179495 http://dx.doi.org/10.1080/23802359.2021.1938728 |
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author | Wang, Zhen Ren, Weichao Yan, Song Zhang, Meiqi Liu, Yunwei Ma, Wei |
author_facet | Wang, Zhen Ren, Weichao Yan, Song Zhang, Meiqi Liu, Yunwei Ma, Wei |
author_sort | Wang, Zhen |
collection | PubMed |
description | Sanicula rubriflora refers to a kind of edible wild herbs, which possesses reputed medicinal value. Chloroplasts (cp) is essential organelle in plant cells and has a genome that can be inherited autonomously. The complete chloroplast genome of S. rubriflora was assemble and annotated in the present study. It was a circular molecular genome with a size of 155,700 bp in length, which has a typical quadripartite structure. For instance, a large single-copy (LSC) of 85,979 bp and a pair of inverted repeats (IRs) of 26,333 bp were disconnected by a small single-copy (SSC) of 17,053bp. A total of 130 genes have been annotated, including 86 protein-coding genes (PCGs), 36 transfer RNA genes (tRNAs) and 8 ribosomal RNA genes (rRNAs). The total GC content of the complete chloroplast genome reached 37.9%. A maximum likelihood phylogenetic analysis with the reported chloroplast genomes revealed that S. rubriflora is most closely related to Saniculachinensis in the phylogenetic relationships. |
format | Online Article Text |
id | pubmed-8205028 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | Taylor & Francis |
record_format | MEDLINE/PubMed |
spelling | pubmed-82050282021-06-24 Characterization of the complete chloroplast genome of Sanicula rubriflora F. Schmidt ex Maxim Wang, Zhen Ren, Weichao Yan, Song Zhang, Meiqi Liu, Yunwei Ma, Wei Mitochondrial DNA B Resour Mitogenome Announcement Sanicula rubriflora refers to a kind of edible wild herbs, which possesses reputed medicinal value. Chloroplasts (cp) is essential organelle in plant cells and has a genome that can be inherited autonomously. The complete chloroplast genome of S. rubriflora was assemble and annotated in the present study. It was a circular molecular genome with a size of 155,700 bp in length, which has a typical quadripartite structure. For instance, a large single-copy (LSC) of 85,979 bp and a pair of inverted repeats (IRs) of 26,333 bp were disconnected by a small single-copy (SSC) of 17,053bp. A total of 130 genes have been annotated, including 86 protein-coding genes (PCGs), 36 transfer RNA genes (tRNAs) and 8 ribosomal RNA genes (rRNAs). The total GC content of the complete chloroplast genome reached 37.9%. A maximum likelihood phylogenetic analysis with the reported chloroplast genomes revealed that S. rubriflora is most closely related to Saniculachinensis in the phylogenetic relationships. Taylor & Francis 2021-06-14 /pmc/articles/PMC8205028/ /pubmed/34179495 http://dx.doi.org/10.1080/23802359.2021.1938728 Text en © 2021 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Mitogenome Announcement Wang, Zhen Ren, Weichao Yan, Song Zhang, Meiqi Liu, Yunwei Ma, Wei Characterization of the complete chloroplast genome of Sanicula rubriflora F. Schmidt ex Maxim |
title | Characterization of the complete chloroplast genome of Sanicula rubriflora F. Schmidt ex Maxim |
title_full | Characterization of the complete chloroplast genome of Sanicula rubriflora F. Schmidt ex Maxim |
title_fullStr | Characterization of the complete chloroplast genome of Sanicula rubriflora F. Schmidt ex Maxim |
title_full_unstemmed | Characterization of the complete chloroplast genome of Sanicula rubriflora F. Schmidt ex Maxim |
title_short | Characterization of the complete chloroplast genome of Sanicula rubriflora F. Schmidt ex Maxim |
title_sort | characterization of the complete chloroplast genome of sanicula rubriflora f. schmidt ex maxim |
topic | Mitogenome Announcement |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8205028/ https://www.ncbi.nlm.nih.gov/pubmed/34179495 http://dx.doi.org/10.1080/23802359.2021.1938728 |
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