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Characterization of the complete chloroplast genome of Sanicula rubriflora F. Schmidt ex Maxim

Sanicula rubriflora refers to a kind of edible wild herbs, which possesses reputed medicinal value. Chloroplasts (cp) is essential organelle in plant cells and has a genome that can be inherited autonomously. The complete chloroplast genome of S. rubriflora was assemble and annotated in the present...

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Autores principales: Wang, Zhen, Ren, Weichao, Yan, Song, Zhang, Meiqi, Liu, Yunwei, Ma, Wei
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8205028/
https://www.ncbi.nlm.nih.gov/pubmed/34179495
http://dx.doi.org/10.1080/23802359.2021.1938728
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author Wang, Zhen
Ren, Weichao
Yan, Song
Zhang, Meiqi
Liu, Yunwei
Ma, Wei
author_facet Wang, Zhen
Ren, Weichao
Yan, Song
Zhang, Meiqi
Liu, Yunwei
Ma, Wei
author_sort Wang, Zhen
collection PubMed
description Sanicula rubriflora refers to a kind of edible wild herbs, which possesses reputed medicinal value. Chloroplasts (cp) is essential organelle in plant cells and has a genome that can be inherited autonomously. The complete chloroplast genome of S. rubriflora was assemble and annotated in the present study. It was a circular molecular genome with a size of 155,700 bp in length, which has a typical quadripartite structure. For instance, a large single-copy (LSC) of 85,979 bp and a pair of inverted repeats (IRs) of 26,333 bp were disconnected by a small single-copy (SSC) of 17,053bp. A total of 130 genes have been annotated, including 86 protein-coding genes (PCGs), 36 transfer RNA genes (tRNAs) and 8 ribosomal RNA genes (rRNAs). The total GC content of the complete chloroplast genome reached 37.9%. A maximum likelihood phylogenetic analysis with the reported chloroplast genomes revealed that S. rubriflora is most closely related to Saniculachinensis in the phylogenetic relationships.
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spelling pubmed-82050282021-06-24 Characterization of the complete chloroplast genome of Sanicula rubriflora F. Schmidt ex Maxim Wang, Zhen Ren, Weichao Yan, Song Zhang, Meiqi Liu, Yunwei Ma, Wei Mitochondrial DNA B Resour Mitogenome Announcement Sanicula rubriflora refers to a kind of edible wild herbs, which possesses reputed medicinal value. Chloroplasts (cp) is essential organelle in plant cells and has a genome that can be inherited autonomously. The complete chloroplast genome of S. rubriflora was assemble and annotated in the present study. It was a circular molecular genome with a size of 155,700 bp in length, which has a typical quadripartite structure. For instance, a large single-copy (LSC) of 85,979 bp and a pair of inverted repeats (IRs) of 26,333 bp were disconnected by a small single-copy (SSC) of 17,053bp. A total of 130 genes have been annotated, including 86 protein-coding genes (PCGs), 36 transfer RNA genes (tRNAs) and 8 ribosomal RNA genes (rRNAs). The total GC content of the complete chloroplast genome reached 37.9%. A maximum likelihood phylogenetic analysis with the reported chloroplast genomes revealed that S. rubriflora is most closely related to Saniculachinensis in the phylogenetic relationships. Taylor & Francis 2021-06-14 /pmc/articles/PMC8205028/ /pubmed/34179495 http://dx.doi.org/10.1080/23802359.2021.1938728 Text en © 2021 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Mitogenome Announcement
Wang, Zhen
Ren, Weichao
Yan, Song
Zhang, Meiqi
Liu, Yunwei
Ma, Wei
Characterization of the complete chloroplast genome of Sanicula rubriflora F. Schmidt ex Maxim
title Characterization of the complete chloroplast genome of Sanicula rubriflora F. Schmidt ex Maxim
title_full Characterization of the complete chloroplast genome of Sanicula rubriflora F. Schmidt ex Maxim
title_fullStr Characterization of the complete chloroplast genome of Sanicula rubriflora F. Schmidt ex Maxim
title_full_unstemmed Characterization of the complete chloroplast genome of Sanicula rubriflora F. Schmidt ex Maxim
title_short Characterization of the complete chloroplast genome of Sanicula rubriflora F. Schmidt ex Maxim
title_sort characterization of the complete chloroplast genome of sanicula rubriflora f. schmidt ex maxim
topic Mitogenome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8205028/
https://www.ncbi.nlm.nih.gov/pubmed/34179495
http://dx.doi.org/10.1080/23802359.2021.1938728
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