Cargando…

Structural phylogenetic analysis reveals lineage-specific RNA repetitive structural motifs in all coronaviruses and associated variations in SARS-CoV-2

In many single-stranded (ss) RNA viruses, the cis-acting packaging signal that confers selectivity genome packaging usually encompasses short structured RNA repeats. These structural units, termed repetitive structural motifs (RSMs), potentially mediate capsid assembly by specific RNA–protein intera...

Descripción completa

Detalles Bibliográficos
Autores principales:	Chen, Shih-Cheng, Olsthoorn, René C L, Yu, Chien-Hung
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	Oxford University Press 2021
Materias:	Research Article
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8206606/ https://www.ncbi.nlm.nih.gov/pubmed/34141447 http://dx.doi.org/10.1093/ve/veab021

Ejemplares similares

Group-specific structural features of the 5′-proximal sequences of coronavirus genomic RNAs
por: Chen, Shih-Cheng, et al.
Publicado: (2010)

Phylogenetic analysis and sequence comparisons of structural and non-structural SARS coronavirus proteins in Taiwan
por: Lan, Yu-Ching, et al.
Publicado: (2005)

Stimulation of ribosomal frameshifting by RNA G-quadruplex structures
por: Yu, Chien-Hung, et al.
Publicado: (2014)

All genera of Flaviviridae host a conserved Xrn1-resistant RNA motif
por: Dilweg, Ivar W., et al.
Publicado: (2021)

Conserved structural RNA domains in regions coding for cleavage site motifs in hemagglutinin genes of influenza viruses
por: Gultyaev, Alexander P, et al.
Publicado: (2019)

Structural Analysis of a Repetitive Protein Sequence Motif in Strepsirrhine Primate Amelogenin
por: Lacruz, Rodrigo S., et al.
Publicado: (2011)

Revealing structural peculiarities of homopurine GA repetition stuck by i-motif clip
por: Novotný, Aleš, et al.
Publicado: (2021)

Structural evolution of Delta lineage of SARS-CoV-2
por: Gomari, Mohammad Mahmoudi, et al.
Publicado: (2023)

Emerging phylogenetic structure of the SARS-CoV-2 pandemic
por: Fountain-Jones, Nicholas M, et al.
Publicado: (2020)

Stem–loop structures can effectively substitute for an RNA pseudoknot in −1 ribosomal frameshifting
por: Yu, Chien-Hung, et al.
Publicado: (2011)

Phylogenetic plant community structure along elevation is lineage specific
por: Ndiribe, Charlotte, et al.
Publicado: (2013)

Structural, glycosylation and antigenic variation between 2019 novel coronavirus (2019-nCoV) and SARS coronavirus (SARS-CoV)
por: Kumar, Swatantra, et al.
Publicado: (2020)

Phylogenetic screen for important RNA structure motifs in the HIV-1 genome
por: Knoepfel, Stefanie A, et al.
Publicado: (2011)

Investigation of the genetic variation in ACE2 on the structural recognition by the novel coronavirus (SARS-CoV-2)
por: Guo, Xingyi, et al.
Publicado: (2020)

Phylogenetic Structure and Sequential Dominance of Sub-Lineages of PRRSV Type-2 Lineage 1 in the United States
por: Paploski, Igor A. D., et al.
Publicado: (2021)

seeMotif: exploring and visualizing sequence motifs in 3D structures
por: Chang, Darby Tien-Hao, et al.
Publicado: (2009)

Motif-All: discovering all phosphorylation motifs
por: He, Zengyou, et al.
Publicado: (2011)

Phylogenetic and amino acid signature analysis of the SARS-CoV-2s lineages circulating in Tunisia
por: Sassi, Mouna Ben, et al.
Publicado: (2022)

Xrn1-resistant RNA motifs are disseminated throughout the RNA virome and are able to block scanning ribosomes
por: Dilweg, Ivar W., et al.
Publicado: (2023)

Trafficking motifs in the SARS-coronavirus nucleocapsid protein
por: You, Jae-Hwan, et al.
Publicado: (2007)

Intergenic regions of Borrelia plasmids contain phylogenetically conserved RNA secondary structure motifs
por: Delihas, Nicholas
Publicado: (2009)

Phylogenetic community structure: temporal variation in fish assemblage
por: Santorelli, Sergio, et al.
Publicado: (2014)

Exposing Structural Variations in SARS-CoV-2 Evolution
por: Yang, Jiaan, et al.
Publicado: (2021)

Exposing structural variations in SARS-CoV-2 evolution
por: Yang, Jiaan, et al.
Publicado: (2021)

Phylogenetic lineages in the Botryosphaeriaceae
por: Crous, Pedro W., et al.
Publicado: (2006)

Phylogenetic lineages in the Capnodiales
por: Crous, P.W., et al.
Publicado: (2009)

Phylogenetic lineages in Entomophthoromycota
por: Gryganskyi, A.P., et al.
Publicado: (2013)

Phylogenetic lineages in Pseudocercospora
por: Crous, P.W., et al.
Publicado: (2013)

Structural features of an Xrn1-resistant plant virus RNA
por: Dilweg, Ivar W., et al.
Publicado: (2019)

Rapid and Repetitive Inactivation of SARS‐CoV‐2 and Human Coronavirus on Self‐Disinfecting Anionic Polymers
por: Peddinti, Bharadwaja S. T., et al.
Publicado: (2021)

Structural Genomic Analysis of SARS-CoV-2 and Other Coronaviruses
por: Zhang, Qiong, et al.
Publicado: (2022)

Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) and coronavirus disease-2019 (COVID-19): The epidemic and the challenges
por: Lai, Chih-Cheng, et al.
Publicado: (2020)

Coronavirus motif
por: BRITTON, PAUL
Publicado: (1991)

Effect of Repetitive Lysine-Tryptophan Motifs on the Eukaryotic Membrane
por: Gopal, Ramamourthy, et al.
Publicado: (2013)

Comparative structural analyses of selected spike protein-RBD mutations in SARS-CoV-2 lineages
por: Roy, Urmi
Publicado: (2021)

Structural characteristics of the SARS-CoV-2 Omicron lineages BA.1 and BA.2 virions
por: Ma, Xiaoyu, et al.
Publicado: (2023)

Structure-Based Sequence Alignment of the Transmembrane Domains of All Human GPCRs: Phylogenetic, Structural and Functional Implications
por: Cvicek, Vaclav, et al.
Publicado: (2016)

Structural Basis of RNA Cap Modification by SARS-CoV-2 Coronavirus
por: Viswanathan, Thiruselvam, et al.
Publicado: (2020)

Phylogenetic study of nine species of freshwater monogeneans using secondary structure and motif prediction from India
por: Chaudhary, Anshu, et al.
Publicado: (2012)

Phylogenetic perspectives on the epidemiology and origins of SARS and SARS-like coronaviruses
por: Yip, Chi Wai, et al.
Publicado: (2009)

Cannot write session to /tmp/vufind_sessions/sess_edas8844vqi143vngsc4ilqtjk