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The PhenX Toolkit: Establishing Standard Measures for COVID‐19 Research

The PhenX (consensus measures for Phenotypes and eXposures) Toolkit (https://www.phenxtoolkit.org/) is a publicly available, web‐based catalog of recommended, well‐established measurement protocols of phenotypes and exposures. The goal of PhenX is to facilitate the use of standard measures, enhance...

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Autores principales: Krzyzanowski, Michelle C., Terry, Ian, Williams, David, West, Pat, Gridley, Lauren N., Hamilton, Carol M.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: John Wiley and Sons Inc. 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8206667/
https://www.ncbi.nlm.nih.gov/pubmed/33905618
http://dx.doi.org/10.1002/cpz1.111
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author Krzyzanowski, Michelle C.
Terry, Ian
Williams, David
West, Pat
Gridley, Lauren N.
Hamilton, Carol M.
author_facet Krzyzanowski, Michelle C.
Terry, Ian
Williams, David
West, Pat
Gridley, Lauren N.
Hamilton, Carol M.
author_sort Krzyzanowski, Michelle C.
collection PubMed
description The PhenX (consensus measures for Phenotypes and eXposures) Toolkit (https://www.phenxtoolkit.org/) is a publicly available, web‐based catalog of recommended, well‐established measurement protocols of phenotypes and exposures. The goal of PhenX is to facilitate the use of standard measures, enhance data interoperability, and promote collaborative and translational research. PhenX is driven by the scientific community and historically has depended on working groups of experts to recommend measures for release in the PhenX Toolkit. The urgent need for recommended, standard measures for COVID‐19 research triggered the development of a “rapid release” process for releasing new content in the PhenX Toolkit. Initially, PhenX collaborated with the National Institutes of Health (NIH) Office of Behavioral and Social Sciences Research, the National Human Genome Research Institute, and the NIH Disaster Research Response (DR2) program to create a library of COVID‐19 measurement protocols. With additional support from NIH, PhenX adapted crowdsourcing techniques to accelerate prioritization and recommendation of protocols for release in the PhenX Toolkit. Prioritized COVID‐19‐specific protocols were used to anchor and define specialty collections of protocols that were subject to review and approval by the PhenX Steering Committee. In addition to the COVID‐19‐specific protocols, the specialty collections include existing, well‐established PhenX protocols, use of which will further enhance data interoperability and cross‐study analysis. The COVID‐19 specialty collections are Behaviors and Risks; Ethnicity, Race and Demographics; History, Treatment and Outcomes; Information Resources; Psychosocial and Mental Health; and Socioeconomic. The development and usage of PhenX COVID‐19 specialty collections are described in this article. © 2021 The Authors. Basic Protocol: Selecting COVID‐19 protocols
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spelling pubmed-82066672021-06-16 The PhenX Toolkit: Establishing Standard Measures for COVID‐19 Research Krzyzanowski, Michelle C. Terry, Ian Williams, David West, Pat Gridley, Lauren N. Hamilton, Carol M. Curr Protoc Protocol The PhenX (consensus measures for Phenotypes and eXposures) Toolkit (https://www.phenxtoolkit.org/) is a publicly available, web‐based catalog of recommended, well‐established measurement protocols of phenotypes and exposures. The goal of PhenX is to facilitate the use of standard measures, enhance data interoperability, and promote collaborative and translational research. PhenX is driven by the scientific community and historically has depended on working groups of experts to recommend measures for release in the PhenX Toolkit. The urgent need for recommended, standard measures for COVID‐19 research triggered the development of a “rapid release” process for releasing new content in the PhenX Toolkit. Initially, PhenX collaborated with the National Institutes of Health (NIH) Office of Behavioral and Social Sciences Research, the National Human Genome Research Institute, and the NIH Disaster Research Response (DR2) program to create a library of COVID‐19 measurement protocols. With additional support from NIH, PhenX adapted crowdsourcing techniques to accelerate prioritization and recommendation of protocols for release in the PhenX Toolkit. Prioritized COVID‐19‐specific protocols were used to anchor and define specialty collections of protocols that were subject to review and approval by the PhenX Steering Committee. In addition to the COVID‐19‐specific protocols, the specialty collections include existing, well‐established PhenX protocols, use of which will further enhance data interoperability and cross‐study analysis. The COVID‐19 specialty collections are Behaviors and Risks; Ethnicity, Race and Demographics; History, Treatment and Outcomes; Information Resources; Psychosocial and Mental Health; and Socioeconomic. The development and usage of PhenX COVID‐19 specialty collections are described in this article. © 2021 The Authors. Basic Protocol: Selecting COVID‐19 protocols John Wiley and Sons Inc. 2021-04-27 2021-04 /pmc/articles/PMC8206667/ /pubmed/33905618 http://dx.doi.org/10.1002/cpz1.111 Text en © 2021 The Authors. https://creativecommons.org/licenses/by-nc-nd/4.0/This is an open access article under the terms of the http://creativecommons.org/licenses/by-nc-nd/4.0/ (https://creativecommons.org/licenses/by-nc-nd/4.0/) License, which permits use and distribution in any medium, provided the original work is properly cited, the use is non‐commercial and no modifications or adaptations are made.
spellingShingle Protocol
Krzyzanowski, Michelle C.
Terry, Ian
Williams, David
West, Pat
Gridley, Lauren N.
Hamilton, Carol M.
The PhenX Toolkit: Establishing Standard Measures for COVID‐19 Research
title The PhenX Toolkit: Establishing Standard Measures for COVID‐19 Research
title_full The PhenX Toolkit: Establishing Standard Measures for COVID‐19 Research
title_fullStr The PhenX Toolkit: Establishing Standard Measures for COVID‐19 Research
title_full_unstemmed The PhenX Toolkit: Establishing Standard Measures for COVID‐19 Research
title_short The PhenX Toolkit: Establishing Standard Measures for COVID‐19 Research
title_sort phenx toolkit: establishing standard measures for covid‐19 research
topic Protocol
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8206667/
https://www.ncbi.nlm.nih.gov/pubmed/33905618
http://dx.doi.org/10.1002/cpz1.111
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