The complete chloroplast genome sequence of Veratrum oxysepalum and phylogenetic analysis

Veratrum oxysepalum Turcz. is a medicinal plant belonging to Melanthiaceae occurring in Northeast China. However, there are still limited genomic resources available for genus Veratrum. The complete chloroplast (cp) genome of V. oxysepalum was determined and analyzed in this study. The complete cp g...

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Autores principales: Chen, Zi-Jian, Liu, Jia-Jia, Zhang, Ying-Min, Qian, Zi-Gang, Li, Guo-Dong
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2021
Materias:
Mitogenome Announcement
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8208108/
https://www.ncbi.nlm.nih.gov/pubmed/34189269
http://dx.doi.org/10.1080/23802359.2021.1940330
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author Chen, Zi-Jian
Liu, Jia-Jia
Zhang, Ying-Min
Qian, Zi-Gang
Li, Guo-Dong
author_facet Chen, Zi-Jian
Liu, Jia-Jia
Zhang, Ying-Min
Qian, Zi-Gang
Li, Guo-Dong
author_sort Chen, Zi-Jian
collection PubMed
description Veratrum oxysepalum Turcz. is a medicinal plant belonging to Melanthiaceae occurring in Northeast China. However, there are still limited genomic resources available for genus Veratrum. The complete chloroplast (cp) genome of V. oxysepalum was determined and analyzed in this study. The complete cp genome was 153,705 bp. That contains a large single copy (LSC) region of 83,384 bp, a small single copy (SSC) region of 17,607 bp, which were separated by a pair of 26,358 bp inverted repeat regions (IRs). A total of 135 genes were annotated, including 83 protein-coding genes, 38 tRNAs, and eight rRNAs. Phylogenetic analysis using total chloroplast genome sequence of 21 species revealed that V. oxysepalum was closely relates to V. patulum of Veratrum with 100% bootstrap value.
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spelling pubmed-82081082021-06-28 The complete chloroplast genome sequence of Veratrum oxysepalum and phylogenetic analysis Chen, Zi-Jian Liu, Jia-Jia Zhang, Ying-Min Qian, Zi-Gang Li, Guo-Dong Mitochondrial DNA B Resour Mitogenome Announcement Veratrum oxysepalum Turcz. is a medicinal plant belonging to Melanthiaceae occurring in Northeast China. However, there are still limited genomic resources available for genus Veratrum. The complete chloroplast (cp) genome of V. oxysepalum was determined and analyzed in this study. The complete cp genome was 153,705 bp. That contains a large single copy (LSC) region of 83,384 bp, a small single copy (SSC) region of 17,607 bp, which were separated by a pair of 26,358 bp inverted repeat regions (IRs). A total of 135 genes were annotated, including 83 protein-coding genes, 38 tRNAs, and eight rRNAs. Phylogenetic analysis using total chloroplast genome sequence of 21 species revealed that V. oxysepalum was closely relates to V. patulum of Veratrum with 100% bootstrap value. Taylor & Francis 2021-06-15 /pmc/articles/PMC8208108/ /pubmed/34189269 http://dx.doi.org/10.1080/23802359.2021.1940330 Text en © 2021 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Mitogenome Announcement
Chen, Zi-Jian
Liu, Jia-Jia
Zhang, Ying-Min
Qian, Zi-Gang
Li, Guo-Dong
The complete chloroplast genome sequence of Veratrum oxysepalum and phylogenetic analysis
title The complete chloroplast genome sequence of Veratrum oxysepalum and phylogenetic analysis
title_full The complete chloroplast genome sequence of Veratrum oxysepalum and phylogenetic analysis
title_fullStr The complete chloroplast genome sequence of Veratrum oxysepalum and phylogenetic analysis
title_full_unstemmed The complete chloroplast genome sequence of Veratrum oxysepalum and phylogenetic analysis
title_short The complete chloroplast genome sequence of Veratrum oxysepalum and phylogenetic analysis
title_sort complete chloroplast genome sequence of veratrum oxysepalum and phylogenetic analysis
topic Mitogenome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8208108/
https://www.ncbi.nlm.nih.gov/pubmed/34189269
http://dx.doi.org/10.1080/23802359.2021.1940330
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