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Detection of plasmid contigs in draft genome assemblies using customized Kraken databases

Plasmids play an important role in bacterial evolution and mediate horizontal transfer of genes including virulence and antimicrobial resistance genes. Although short-read sequencing technologies have enabled large-scale bacterial genomics, the resulting draft genome assemblies are often fragmented...

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Detalles Bibliográficos
Autores principales: Gomi, Ryota, Wyres, Kelly L., Holt, Kathryn E.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Microbiology Society 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8208688/
https://www.ncbi.nlm.nih.gov/pubmed/33826492
http://dx.doi.org/10.1099/mgen.0.000550