Cargando…
Detection of plasmid contigs in draft genome assemblies using customized Kraken databases
Plasmids play an important role in bacterial evolution and mediate horizontal transfer of genes including virulence and antimicrobial resistance genes. Although short-read sequencing technologies have enabled large-scale bacterial genomics, the resulting draft genome assemblies are often fragmented...
Autores principales: | Gomi, Ryota, Wyres, Kelly L., Holt, Kathryn E. |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Microbiology Society
2021
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8208688/ https://www.ncbi.nlm.nih.gov/pubmed/33826492 http://dx.doi.org/10.1099/mgen.0.000550 |
Ejemplares similares
-
The Establishment and Application of a Kraken Classifier for Salmonella Plasmid Sequence Prediction
por: Li, Zhenpeng, et al.
Publicado: (2022) -
PLASMe: a tool to identify PLASMid contigs from short-read assemblies using transformer
por: Tang, Xubo, et al.
Publicado: (2023) -
Kraken: ultrafast metagenomic sequence classification using exact alignments
por: Wood, Derrick E, et al.
Publicado: (2014) -
Releasing the Kraken
por: Salzberg, Steven L., et al.
Publicado: (2021) -
HiCBin: binning metagenomic contigs and recovering metagenome-assembled genomes using Hi-C contact maps
por: Du, Yuxuan, et al.
Publicado: (2022)