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Ultrafast coherent motion and helix rearrangement of homodimeric hemoglobin visualized with femtosecond X-ray solution scattering

Ultrafast motion of molecules, particularly the coherent motion, has been intensively investigated as a key factor guiding the reaction pathways. Recently, X-ray free-electron lasers (XFELs) have been utilized to elucidate the ultrafast motion of molecules. However, the studies on proteins using XFE...

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Autores principales: Lee, Yunbeom, Kim, Jong Goo, Lee, Sang Jin, Muniyappan, Srinivasan, Kim, Tae Wu, Ki, Hosung, Kim, Hanui, Jo, Junbeom, Yun, So Ri, Lee, Hyosub, Lee, Kyung Won, Kim, Seong Ok, Cammarata, Marco, Ihee, Hyotcherl
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8209046/
https://www.ncbi.nlm.nih.gov/pubmed/34135339
http://dx.doi.org/10.1038/s41467-021-23947-7
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author Lee, Yunbeom
Kim, Jong Goo
Lee, Sang Jin
Muniyappan, Srinivasan
Kim, Tae Wu
Ki, Hosung
Kim, Hanui
Jo, Junbeom
Yun, So Ri
Lee, Hyosub
Lee, Kyung Won
Kim, Seong Ok
Cammarata, Marco
Ihee, Hyotcherl
author_facet Lee, Yunbeom
Kim, Jong Goo
Lee, Sang Jin
Muniyappan, Srinivasan
Kim, Tae Wu
Ki, Hosung
Kim, Hanui
Jo, Junbeom
Yun, So Ri
Lee, Hyosub
Lee, Kyung Won
Kim, Seong Ok
Cammarata, Marco
Ihee, Hyotcherl
author_sort Lee, Yunbeom
collection PubMed
description Ultrafast motion of molecules, particularly the coherent motion, has been intensively investigated as a key factor guiding the reaction pathways. Recently, X-ray free-electron lasers (XFELs) have been utilized to elucidate the ultrafast motion of molecules. However, the studies on proteins using XFELs have been typically limited to the crystalline phase, and proteins in solution have rarely been investigated. Here we applied femtosecond time-resolved X-ray solution scattering (fs-TRXSS) and a structure refinement method to visualize the ultrafast motion of a protein. We succeeded in revealing detailed ultrafast structural changes of homodimeric hemoglobin involving the coherent motion. In addition to the motion of the protein itself, the time-dependent change of electron density of the hydration shell was tracked. Besides, the analysis on the fs-TRXSS data of myoglobin allows for observing the effect of the oligomeric state on the ultrafast coherent motion.
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spelling pubmed-82090462021-07-01 Ultrafast coherent motion and helix rearrangement of homodimeric hemoglobin visualized with femtosecond X-ray solution scattering Lee, Yunbeom Kim, Jong Goo Lee, Sang Jin Muniyappan, Srinivasan Kim, Tae Wu Ki, Hosung Kim, Hanui Jo, Junbeom Yun, So Ri Lee, Hyosub Lee, Kyung Won Kim, Seong Ok Cammarata, Marco Ihee, Hyotcherl Nat Commun Article Ultrafast motion of molecules, particularly the coherent motion, has been intensively investigated as a key factor guiding the reaction pathways. Recently, X-ray free-electron lasers (XFELs) have been utilized to elucidate the ultrafast motion of molecules. However, the studies on proteins using XFELs have been typically limited to the crystalline phase, and proteins in solution have rarely been investigated. Here we applied femtosecond time-resolved X-ray solution scattering (fs-TRXSS) and a structure refinement method to visualize the ultrafast motion of a protein. We succeeded in revealing detailed ultrafast structural changes of homodimeric hemoglobin involving the coherent motion. In addition to the motion of the protein itself, the time-dependent change of electron density of the hydration shell was tracked. Besides, the analysis on the fs-TRXSS data of myoglobin allows for observing the effect of the oligomeric state on the ultrafast coherent motion. Nature Publishing Group UK 2021-06-16 /pmc/articles/PMC8209046/ /pubmed/34135339 http://dx.doi.org/10.1038/s41467-021-23947-7 Text en © The Author(s) 2021 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Article
Lee, Yunbeom
Kim, Jong Goo
Lee, Sang Jin
Muniyappan, Srinivasan
Kim, Tae Wu
Ki, Hosung
Kim, Hanui
Jo, Junbeom
Yun, So Ri
Lee, Hyosub
Lee, Kyung Won
Kim, Seong Ok
Cammarata, Marco
Ihee, Hyotcherl
Ultrafast coherent motion and helix rearrangement of homodimeric hemoglobin visualized with femtosecond X-ray solution scattering
title Ultrafast coherent motion and helix rearrangement of homodimeric hemoglobin visualized with femtosecond X-ray solution scattering
title_full Ultrafast coherent motion and helix rearrangement of homodimeric hemoglobin visualized with femtosecond X-ray solution scattering
title_fullStr Ultrafast coherent motion and helix rearrangement of homodimeric hemoglobin visualized with femtosecond X-ray solution scattering
title_full_unstemmed Ultrafast coherent motion and helix rearrangement of homodimeric hemoglobin visualized with femtosecond X-ray solution scattering
title_short Ultrafast coherent motion and helix rearrangement of homodimeric hemoglobin visualized with femtosecond X-ray solution scattering
title_sort ultrafast coherent motion and helix rearrangement of homodimeric hemoglobin visualized with femtosecond x-ray solution scattering
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8209046/
https://www.ncbi.nlm.nih.gov/pubmed/34135339
http://dx.doi.org/10.1038/s41467-021-23947-7
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