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Ultrafast coherent motion and helix rearrangement of homodimeric hemoglobin visualized with femtosecond X-ray solution scattering
Ultrafast motion of molecules, particularly the coherent motion, has been intensively investigated as a key factor guiding the reaction pathways. Recently, X-ray free-electron lasers (XFELs) have been utilized to elucidate the ultrafast motion of molecules. However, the studies on proteins using XFE...
Autores principales: | , , , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group UK
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8209046/ https://www.ncbi.nlm.nih.gov/pubmed/34135339 http://dx.doi.org/10.1038/s41467-021-23947-7 |
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author | Lee, Yunbeom Kim, Jong Goo Lee, Sang Jin Muniyappan, Srinivasan Kim, Tae Wu Ki, Hosung Kim, Hanui Jo, Junbeom Yun, So Ri Lee, Hyosub Lee, Kyung Won Kim, Seong Ok Cammarata, Marco Ihee, Hyotcherl |
author_facet | Lee, Yunbeom Kim, Jong Goo Lee, Sang Jin Muniyappan, Srinivasan Kim, Tae Wu Ki, Hosung Kim, Hanui Jo, Junbeom Yun, So Ri Lee, Hyosub Lee, Kyung Won Kim, Seong Ok Cammarata, Marco Ihee, Hyotcherl |
author_sort | Lee, Yunbeom |
collection | PubMed |
description | Ultrafast motion of molecules, particularly the coherent motion, has been intensively investigated as a key factor guiding the reaction pathways. Recently, X-ray free-electron lasers (XFELs) have been utilized to elucidate the ultrafast motion of molecules. However, the studies on proteins using XFELs have been typically limited to the crystalline phase, and proteins in solution have rarely been investigated. Here we applied femtosecond time-resolved X-ray solution scattering (fs-TRXSS) and a structure refinement method to visualize the ultrafast motion of a protein. We succeeded in revealing detailed ultrafast structural changes of homodimeric hemoglobin involving the coherent motion. In addition to the motion of the protein itself, the time-dependent change of electron density of the hydration shell was tracked. Besides, the analysis on the fs-TRXSS data of myoglobin allows for observing the effect of the oligomeric state on the ultrafast coherent motion. |
format | Online Article Text |
id | pubmed-8209046 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-82090462021-07-01 Ultrafast coherent motion and helix rearrangement of homodimeric hemoglobin visualized with femtosecond X-ray solution scattering Lee, Yunbeom Kim, Jong Goo Lee, Sang Jin Muniyappan, Srinivasan Kim, Tae Wu Ki, Hosung Kim, Hanui Jo, Junbeom Yun, So Ri Lee, Hyosub Lee, Kyung Won Kim, Seong Ok Cammarata, Marco Ihee, Hyotcherl Nat Commun Article Ultrafast motion of molecules, particularly the coherent motion, has been intensively investigated as a key factor guiding the reaction pathways. Recently, X-ray free-electron lasers (XFELs) have been utilized to elucidate the ultrafast motion of molecules. However, the studies on proteins using XFELs have been typically limited to the crystalline phase, and proteins in solution have rarely been investigated. Here we applied femtosecond time-resolved X-ray solution scattering (fs-TRXSS) and a structure refinement method to visualize the ultrafast motion of a protein. We succeeded in revealing detailed ultrafast structural changes of homodimeric hemoglobin involving the coherent motion. In addition to the motion of the protein itself, the time-dependent change of electron density of the hydration shell was tracked. Besides, the analysis on the fs-TRXSS data of myoglobin allows for observing the effect of the oligomeric state on the ultrafast coherent motion. Nature Publishing Group UK 2021-06-16 /pmc/articles/PMC8209046/ /pubmed/34135339 http://dx.doi.org/10.1038/s41467-021-23947-7 Text en © The Author(s) 2021 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . |
spellingShingle | Article Lee, Yunbeom Kim, Jong Goo Lee, Sang Jin Muniyappan, Srinivasan Kim, Tae Wu Ki, Hosung Kim, Hanui Jo, Junbeom Yun, So Ri Lee, Hyosub Lee, Kyung Won Kim, Seong Ok Cammarata, Marco Ihee, Hyotcherl Ultrafast coherent motion and helix rearrangement of homodimeric hemoglobin visualized with femtosecond X-ray solution scattering |
title | Ultrafast coherent motion and helix rearrangement of homodimeric hemoglobin visualized with femtosecond X-ray solution scattering |
title_full | Ultrafast coherent motion and helix rearrangement of homodimeric hemoglobin visualized with femtosecond X-ray solution scattering |
title_fullStr | Ultrafast coherent motion and helix rearrangement of homodimeric hemoglobin visualized with femtosecond X-ray solution scattering |
title_full_unstemmed | Ultrafast coherent motion and helix rearrangement of homodimeric hemoglobin visualized with femtosecond X-ray solution scattering |
title_short | Ultrafast coherent motion and helix rearrangement of homodimeric hemoglobin visualized with femtosecond X-ray solution scattering |
title_sort | ultrafast coherent motion and helix rearrangement of homodimeric hemoglobin visualized with femtosecond x-ray solution scattering |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8209046/ https://www.ncbi.nlm.nih.gov/pubmed/34135339 http://dx.doi.org/10.1038/s41467-021-23947-7 |
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