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Development and validation of an individualized immune prognostic model in stage I–III lung squamous cell carcinoma

Lung squamous cell carcinoma (LUSC) possesses a poor prognosis even for stages I–III resected patients. Reliable prognostic biomarkers that can stratify and predict clinical outcomes for stage I–III resected LUSC patients are urgently needed. Based on gene expression of LUSC tissue samples from five...

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Autores principales: Yang, Qi-Fan, Wu, Di, Wang, Jian, Ba, Li, Tian, Chen, Liu, Yu-Ting, Hu, Yue, Liu, Li
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8209222/
https://www.ncbi.nlm.nih.gov/pubmed/34135424
http://dx.doi.org/10.1038/s41598-021-92115-0
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author Yang, Qi-Fan
Wu, Di
Wang, Jian
Ba, Li
Tian, Chen
Liu, Yu-Ting
Hu, Yue
Liu, Li
author_facet Yang, Qi-Fan
Wu, Di
Wang, Jian
Ba, Li
Tian, Chen
Liu, Yu-Ting
Hu, Yue
Liu, Li
author_sort Yang, Qi-Fan
collection PubMed
description Lung squamous cell carcinoma (LUSC) possesses a poor prognosis even for stages I–III resected patients. Reliable prognostic biomarkers that can stratify and predict clinical outcomes for stage I–III resected LUSC patients are urgently needed. Based on gene expression of LUSC tissue samples from five public datasets, consisting of 687 cases, we developed an immune-related prognostic model (IPM) according to immune genes from ImmPort database. Then, we comprehensively analyzed the immune microenvironment and mutation burden that are significantly associated with this model. According to the IPM, patients were stratified into high- and low-risk groups with markedly distinct survival benefits. We found that patients with high immune risk possessed a higher proportion of immunosuppressive cells such as macrophages M0, and presented higher expression of CD47, CD73, SIRPA, and TIM-3. Moreover, When further stratified based on the tumor mutation burden (TMB) and risk score, patients with high TMB and low immune risk had a remarkable prolonged overall survival compared to patients with low TMB and high immune risk. Finally, a nomogram combing the IPM with clinical factors was established to provide a more precise evaluation of prognosis. The proposed immune relevant model is a promising biomarker for predicting overall survival in stage I–III LUSC. Thus, it may shed light on identifying patient subset at high risk of adverse prognosis from an immunological perspective.
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spelling pubmed-82092222021-06-17 Development and validation of an individualized immune prognostic model in stage I–III lung squamous cell carcinoma Yang, Qi-Fan Wu, Di Wang, Jian Ba, Li Tian, Chen Liu, Yu-Ting Hu, Yue Liu, Li Sci Rep Article Lung squamous cell carcinoma (LUSC) possesses a poor prognosis even for stages I–III resected patients. Reliable prognostic biomarkers that can stratify and predict clinical outcomes for stage I–III resected LUSC patients are urgently needed. Based on gene expression of LUSC tissue samples from five public datasets, consisting of 687 cases, we developed an immune-related prognostic model (IPM) according to immune genes from ImmPort database. Then, we comprehensively analyzed the immune microenvironment and mutation burden that are significantly associated with this model. According to the IPM, patients were stratified into high- and low-risk groups with markedly distinct survival benefits. We found that patients with high immune risk possessed a higher proportion of immunosuppressive cells such as macrophages M0, and presented higher expression of CD47, CD73, SIRPA, and TIM-3. Moreover, When further stratified based on the tumor mutation burden (TMB) and risk score, patients with high TMB and low immune risk had a remarkable prolonged overall survival compared to patients with low TMB and high immune risk. Finally, a nomogram combing the IPM with clinical factors was established to provide a more precise evaluation of prognosis. The proposed immune relevant model is a promising biomarker for predicting overall survival in stage I–III LUSC. Thus, it may shed light on identifying patient subset at high risk of adverse prognosis from an immunological perspective. Nature Publishing Group UK 2021-06-16 /pmc/articles/PMC8209222/ /pubmed/34135424 http://dx.doi.org/10.1038/s41598-021-92115-0 Text en © The Author(s) 2021 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Article
Yang, Qi-Fan
Wu, Di
Wang, Jian
Ba, Li
Tian, Chen
Liu, Yu-Ting
Hu, Yue
Liu, Li
Development and validation of an individualized immune prognostic model in stage I–III lung squamous cell carcinoma
title Development and validation of an individualized immune prognostic model in stage I–III lung squamous cell carcinoma
title_full Development and validation of an individualized immune prognostic model in stage I–III lung squamous cell carcinoma
title_fullStr Development and validation of an individualized immune prognostic model in stage I–III lung squamous cell carcinoma
title_full_unstemmed Development and validation of an individualized immune prognostic model in stage I–III lung squamous cell carcinoma
title_short Development and validation of an individualized immune prognostic model in stage I–III lung squamous cell carcinoma
title_sort development and validation of an individualized immune prognostic model in stage i–iii lung squamous cell carcinoma
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8209222/
https://www.ncbi.nlm.nih.gov/pubmed/34135424
http://dx.doi.org/10.1038/s41598-021-92115-0
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