Cargando…

Identification of a glycolysis‐related gene signature associated with clinical outcome for patients with lung squamous cell carcinoma

BACKGROUND: Lung squamous cell carcinoma (LUSC), one of the main types of lung cancer, has caused a huge social burden. There has been no significant progress in its therapy in recent years, Resulting in a poor prognosis. This study aims to develop a glycolysis‐related gene signature to predict pati...

Descripción completa

Detalles Bibliográficos
Autores principales: Xu, Ziming, Zhang, Shiwei, Nian, Fulai, Xu, Shangyu
Formato: Online Artículo Texto
Lenguaje:English
Publicado: John Wiley and Sons Inc. 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8209576/
https://www.ncbi.nlm.nih.gov/pubmed/33991070
http://dx.doi.org/10.1002/cam4.3945
_version_ 1783709157136793600
author Xu, Ziming
Zhang, Shiwei
Nian, Fulai
Xu, Shangyu
author_facet Xu, Ziming
Zhang, Shiwei
Nian, Fulai
Xu, Shangyu
author_sort Xu, Ziming
collection PubMed
description BACKGROUND: Lung squamous cell carcinoma (LUSC), one of the main types of lung cancer, has caused a huge social burden. There has been no significant progress in its therapy in recent years, Resulting in a poor prognosis. This study aims to develop a glycolysis‐related gene signature to predict patients’ survival with LUSC and explore new therapeutic targets. METHODS: We obtained the mRNA expression and clinical information of 550 patients with LUSC from the Cancer Genome Atlas (TCGA) database. Glycolysis genes were identified by Gene Set Enrichment Analysis (GSEA). The glycolysis‐related gene signature was established using the Cox regression analysis. RESULTS: We developed five glycolysis‐related genes signature (HKDC1, AGL, ALDH7A1, SLC16A3, and MIOX) to calculate each patient's risk score. According to the risk score, patients were divided into high‐ and low‐risk groups and exhibited significant differences in overall survival (OS) between the two groups. The ROC curves showed that the AUC was 0.707 for the training cohort and 0.651 for the validation cohort. Additionally, the risk score was confirmed as an independent risk factor for LUSC patients by Cox regression analysis. CONCLUSION: We built a gene signature to clarify the connection between glycolysis and LUSC. This model performs well in evaluating patients’ survival with LUSC and provides new biomarkers for targeted therapy.
format Online
Article
Text
id pubmed-8209576
institution National Center for Biotechnology Information
language English
publishDate 2021
publisher John Wiley and Sons Inc.
record_format MEDLINE/PubMed
spelling pubmed-82095762021-06-25 Identification of a glycolysis‐related gene signature associated with clinical outcome for patients with lung squamous cell carcinoma Xu, Ziming Zhang, Shiwei Nian, Fulai Xu, Shangyu Cancer Med Cancer Biology BACKGROUND: Lung squamous cell carcinoma (LUSC), one of the main types of lung cancer, has caused a huge social burden. There has been no significant progress in its therapy in recent years, Resulting in a poor prognosis. This study aims to develop a glycolysis‐related gene signature to predict patients’ survival with LUSC and explore new therapeutic targets. METHODS: We obtained the mRNA expression and clinical information of 550 patients with LUSC from the Cancer Genome Atlas (TCGA) database. Glycolysis genes were identified by Gene Set Enrichment Analysis (GSEA). The glycolysis‐related gene signature was established using the Cox regression analysis. RESULTS: We developed five glycolysis‐related genes signature (HKDC1, AGL, ALDH7A1, SLC16A3, and MIOX) to calculate each patient's risk score. According to the risk score, patients were divided into high‐ and low‐risk groups and exhibited significant differences in overall survival (OS) between the two groups. The ROC curves showed that the AUC was 0.707 for the training cohort and 0.651 for the validation cohort. Additionally, the risk score was confirmed as an independent risk factor for LUSC patients by Cox regression analysis. CONCLUSION: We built a gene signature to clarify the connection between glycolysis and LUSC. This model performs well in evaluating patients’ survival with LUSC and provides new biomarkers for targeted therapy. John Wiley and Sons Inc. 2021-05-15 /pmc/articles/PMC8209576/ /pubmed/33991070 http://dx.doi.org/10.1002/cam4.3945 Text en © 2021 The Authors. Cancer Medicine published by John Wiley & Sons Ltd. https://creativecommons.org/licenses/by/4.0/This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited.
spellingShingle Cancer Biology
Xu, Ziming
Zhang, Shiwei
Nian, Fulai
Xu, Shangyu
Identification of a glycolysis‐related gene signature associated with clinical outcome for patients with lung squamous cell carcinoma
title Identification of a glycolysis‐related gene signature associated with clinical outcome for patients with lung squamous cell carcinoma
title_full Identification of a glycolysis‐related gene signature associated with clinical outcome for patients with lung squamous cell carcinoma
title_fullStr Identification of a glycolysis‐related gene signature associated with clinical outcome for patients with lung squamous cell carcinoma
title_full_unstemmed Identification of a glycolysis‐related gene signature associated with clinical outcome for patients with lung squamous cell carcinoma
title_short Identification of a glycolysis‐related gene signature associated with clinical outcome for patients with lung squamous cell carcinoma
title_sort identification of a glycolysis‐related gene signature associated with clinical outcome for patients with lung squamous cell carcinoma
topic Cancer Biology
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8209576/
https://www.ncbi.nlm.nih.gov/pubmed/33991070
http://dx.doi.org/10.1002/cam4.3945
work_keys_str_mv AT xuziming identificationofaglycolysisrelatedgenesignatureassociatedwithclinicaloutcomeforpatientswithlungsquamouscellcarcinoma
AT zhangshiwei identificationofaglycolysisrelatedgenesignatureassociatedwithclinicaloutcomeforpatientswithlungsquamouscellcarcinoma
AT nianfulai identificationofaglycolysisrelatedgenesignatureassociatedwithclinicaloutcomeforpatientswithlungsquamouscellcarcinoma
AT xushangyu identificationofaglycolysisrelatedgenesignatureassociatedwithclinicaloutcomeforpatientswithlungsquamouscellcarcinoma