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Could simulation methods solve the curse of sparse data within clinical studies of antibiotic resistance?

Infectious disease (ID) physicians and ID pharmacists commonly confront therapeutic questions relating to antibiotic resistance. Randomized controlled trial data are few and meta-analytic-based approaches to develop the evidence-base from several small studies that might relate to an antibiotic resi...

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Autores principales: Hurley, James C, Brownridge, David
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8210330/
https://www.ncbi.nlm.nih.gov/pubmed/34223093
http://dx.doi.org/10.1093/jacamr/dlab016
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author Hurley, James C
Brownridge, David
author_facet Hurley, James C
Brownridge, David
author_sort Hurley, James C
collection PubMed
description Infectious disease (ID) physicians and ID pharmacists commonly confront therapeutic questions relating to antibiotic resistance. Randomized controlled trial data are few and meta-analytic-based approaches to develop the evidence-base from several small studies that might relate to an antibiotic resistance question are not simple. The overriding challenge is the sparsity of data which is problematic for traditional frequentist methods, being the paradigm underlying the derivation of ‘P value’ inferential statistics. In other sparse data contexts, simulation methods enable answers to key questions that are meaningful, quantitative and potentially relevant. How these simulation methods ‘work’ and how Bayesian-based methods, being not ‘P value based’, can facilitate simulation are reviewed. These methods are becoming increasingly accessible. This review highlights why sparse data is less of an issue within Bayesian versus frequentist paradigms. A fictional pharmacokinetic study with sparse data illustrates a simplistic application of Bayesian and simulation methods to antibiotic dosing. Whether within epidemiological projections or clinical studies, simulation methods are likely to play an increasing role in antimicrobial resistance research within both hospital and community studies of either rare infectious disease or infections within specific population groups.
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spelling pubmed-82103302021-07-02 Could simulation methods solve the curse of sparse data within clinical studies of antibiotic resistance? Hurley, James C Brownridge, David JAC Antimicrob Resist Review Infectious disease (ID) physicians and ID pharmacists commonly confront therapeutic questions relating to antibiotic resistance. Randomized controlled trial data are few and meta-analytic-based approaches to develop the evidence-base from several small studies that might relate to an antibiotic resistance question are not simple. The overriding challenge is the sparsity of data which is problematic for traditional frequentist methods, being the paradigm underlying the derivation of ‘P value’ inferential statistics. In other sparse data contexts, simulation methods enable answers to key questions that are meaningful, quantitative and potentially relevant. How these simulation methods ‘work’ and how Bayesian-based methods, being not ‘P value based’, can facilitate simulation are reviewed. These methods are becoming increasingly accessible. This review highlights why sparse data is less of an issue within Bayesian versus frequentist paradigms. A fictional pharmacokinetic study with sparse data illustrates a simplistic application of Bayesian and simulation methods to antibiotic dosing. Whether within epidemiological projections or clinical studies, simulation methods are likely to play an increasing role in antimicrobial resistance research within both hospital and community studies of either rare infectious disease or infections within specific population groups. Oxford University Press 2021-03-11 /pmc/articles/PMC8210330/ /pubmed/34223093 http://dx.doi.org/10.1093/jacamr/dlab016 Text en © The Author(s) 2021. Published by Oxford University Press on behalf of the British Society for Antimicrobial Chemotherapy. https://creativecommons.org/licenses/by-nc/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/4.0/ (https://creativecommons.org/licenses/by-nc/4.0/) ), which permits non-commercial re-use, distribution, and reproduction in any medium, provided the original work is properly cited. For commercial re-use, please contact journals.permissions@oup.com
spellingShingle Review
Hurley, James C
Brownridge, David
Could simulation methods solve the curse of sparse data within clinical studies of antibiotic resistance?
title Could simulation methods solve the curse of sparse data within clinical studies of antibiotic resistance?
title_full Could simulation methods solve the curse of sparse data within clinical studies of antibiotic resistance?
title_fullStr Could simulation methods solve the curse of sparse data within clinical studies of antibiotic resistance?
title_full_unstemmed Could simulation methods solve the curse of sparse data within clinical studies of antibiotic resistance?
title_short Could simulation methods solve the curse of sparse data within clinical studies of antibiotic resistance?
title_sort could simulation methods solve the curse of sparse data within clinical studies of antibiotic resistance?
topic Review
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8210330/
https://www.ncbi.nlm.nih.gov/pubmed/34223093
http://dx.doi.org/10.1093/jacamr/dlab016
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