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Could simulation methods solve the curse of sparse data within clinical studies of antibiotic resistance?
Infectious disease (ID) physicians and ID pharmacists commonly confront therapeutic questions relating to antibiotic resistance. Randomized controlled trial data are few and meta-analytic-based approaches to develop the evidence-base from several small studies that might relate to an antibiotic resi...
Autores principales: | , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Oxford University Press
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8210330/ https://www.ncbi.nlm.nih.gov/pubmed/34223093 http://dx.doi.org/10.1093/jacamr/dlab016 |
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author | Hurley, James C Brownridge, David |
author_facet | Hurley, James C Brownridge, David |
author_sort | Hurley, James C |
collection | PubMed |
description | Infectious disease (ID) physicians and ID pharmacists commonly confront therapeutic questions relating to antibiotic resistance. Randomized controlled trial data are few and meta-analytic-based approaches to develop the evidence-base from several small studies that might relate to an antibiotic resistance question are not simple. The overriding challenge is the sparsity of data which is problematic for traditional frequentist methods, being the paradigm underlying the derivation of ‘P value’ inferential statistics. In other sparse data contexts, simulation methods enable answers to key questions that are meaningful, quantitative and potentially relevant. How these simulation methods ‘work’ and how Bayesian-based methods, being not ‘P value based’, can facilitate simulation are reviewed. These methods are becoming increasingly accessible. This review highlights why sparse data is less of an issue within Bayesian versus frequentist paradigms. A fictional pharmacokinetic study with sparse data illustrates a simplistic application of Bayesian and simulation methods to antibiotic dosing. Whether within epidemiological projections or clinical studies, simulation methods are likely to play an increasing role in antimicrobial resistance research within both hospital and community studies of either rare infectious disease or infections within specific population groups. |
format | Online Article Text |
id | pubmed-8210330 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | Oxford University Press |
record_format | MEDLINE/PubMed |
spelling | pubmed-82103302021-07-02 Could simulation methods solve the curse of sparse data within clinical studies of antibiotic resistance? Hurley, James C Brownridge, David JAC Antimicrob Resist Review Infectious disease (ID) physicians and ID pharmacists commonly confront therapeutic questions relating to antibiotic resistance. Randomized controlled trial data are few and meta-analytic-based approaches to develop the evidence-base from several small studies that might relate to an antibiotic resistance question are not simple. The overriding challenge is the sparsity of data which is problematic for traditional frequentist methods, being the paradigm underlying the derivation of ‘P value’ inferential statistics. In other sparse data contexts, simulation methods enable answers to key questions that are meaningful, quantitative and potentially relevant. How these simulation methods ‘work’ and how Bayesian-based methods, being not ‘P value based’, can facilitate simulation are reviewed. These methods are becoming increasingly accessible. This review highlights why sparse data is less of an issue within Bayesian versus frequentist paradigms. A fictional pharmacokinetic study with sparse data illustrates a simplistic application of Bayesian and simulation methods to antibiotic dosing. Whether within epidemiological projections or clinical studies, simulation methods are likely to play an increasing role in antimicrobial resistance research within both hospital and community studies of either rare infectious disease or infections within specific population groups. Oxford University Press 2021-03-11 /pmc/articles/PMC8210330/ /pubmed/34223093 http://dx.doi.org/10.1093/jacamr/dlab016 Text en © The Author(s) 2021. Published by Oxford University Press on behalf of the British Society for Antimicrobial Chemotherapy. https://creativecommons.org/licenses/by-nc/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/4.0/ (https://creativecommons.org/licenses/by-nc/4.0/) ), which permits non-commercial re-use, distribution, and reproduction in any medium, provided the original work is properly cited. For commercial re-use, please contact journals.permissions@oup.com |
spellingShingle | Review Hurley, James C Brownridge, David Could simulation methods solve the curse of sparse data within clinical studies of antibiotic resistance? |
title | Could simulation methods solve the curse of sparse data within clinical studies of antibiotic resistance? |
title_full | Could simulation methods solve the curse of sparse data within clinical studies of antibiotic resistance? |
title_fullStr | Could simulation methods solve the curse of sparse data within clinical studies of antibiotic resistance? |
title_full_unstemmed | Could simulation methods solve the curse of sparse data within clinical studies of antibiotic resistance? |
title_short | Could simulation methods solve the curse of sparse data within clinical studies of antibiotic resistance? |
title_sort | could simulation methods solve the curse of sparse data within clinical studies of antibiotic resistance? |
topic | Review |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8210330/ https://www.ncbi.nlm.nih.gov/pubmed/34223093 http://dx.doi.org/10.1093/jacamr/dlab016 |
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