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Integrated Analysis of Cell Cycle–Related and Immunity-Related Biomarker Signatures to Improve the Prognosis Prediction of Lung Adenocarcinoma

BACKGROUND: Lung adenocarcinoma (LUAD) is a leading malignancy and has a poor prognosis over the decades. LUAD is characterized by dysregulation of cell cycle. Immunotherapy has emerged as an ideal option for treating LUAD. Nevertheless, optimal biomarkers to predict outcomes of immunotherapy is sti...

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Autores principales: Chen, Fangyu, Song, Jiahang, Ye, Ziqi, Xu, Bing, Cheng, Hongyan, Zhang, Shu, Sun, Xinchen
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8212041/
https://www.ncbi.nlm.nih.gov/pubmed/34150632
http://dx.doi.org/10.3389/fonc.2021.666826
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author Chen, Fangyu
Song, Jiahang
Ye, Ziqi
Xu, Bing
Cheng, Hongyan
Zhang, Shu
Sun, Xinchen
author_facet Chen, Fangyu
Song, Jiahang
Ye, Ziqi
Xu, Bing
Cheng, Hongyan
Zhang, Shu
Sun, Xinchen
author_sort Chen, Fangyu
collection PubMed
description BACKGROUND: Lung adenocarcinoma (LUAD) is a leading malignancy and has a poor prognosis over the decades. LUAD is characterized by dysregulation of cell cycle. Immunotherapy has emerged as an ideal option for treating LUAD. Nevertheless, optimal biomarkers to predict outcomes of immunotherapy is still ill-defined and little is known about the interaction of cell cycle-related genes (CCRGs) and immunity-related genes (IRGs). METHODS: We downloaded gene expression and clinical data from TCGA and GEO database. LASSO regression and Cox regression were used to construct a differentially expressed CCRGs and IRGs signature. We used Kaplan-Meier analysis to compare survival of LUAD patients. We constructed a nomogram to predict the survival and calibration curves were used to evaluate the accuracy. RESULTS: A total of 61 differentially expressed CCRGs and IRGs were screened out. We constructed a new risk model based on 8 genes, including ACVR1B, BIRC5, NR2E1, INSR, TGFA, BMP7, CD28, NUDT6. Subgroup analysis revealed the risk model accurately predicted the overall survival in LUAD patients with different clinical features and was correlated with immune cells infiltration. A nomogram based on the risk model exhibited excellent performance in survival prediction of LUAD. CONCLUSIONS: The 8 gene survival signature and nomogram in our study are effective and have potential clinical application to predict prognosis of LUAD.
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spelling pubmed-82120412021-06-19 Integrated Analysis of Cell Cycle–Related and Immunity-Related Biomarker Signatures to Improve the Prognosis Prediction of Lung Adenocarcinoma Chen, Fangyu Song, Jiahang Ye, Ziqi Xu, Bing Cheng, Hongyan Zhang, Shu Sun, Xinchen Front Oncol Oncology BACKGROUND: Lung adenocarcinoma (LUAD) is a leading malignancy and has a poor prognosis over the decades. LUAD is characterized by dysregulation of cell cycle. Immunotherapy has emerged as an ideal option for treating LUAD. Nevertheless, optimal biomarkers to predict outcomes of immunotherapy is still ill-defined and little is known about the interaction of cell cycle-related genes (CCRGs) and immunity-related genes (IRGs). METHODS: We downloaded gene expression and clinical data from TCGA and GEO database. LASSO regression and Cox regression were used to construct a differentially expressed CCRGs and IRGs signature. We used Kaplan-Meier analysis to compare survival of LUAD patients. We constructed a nomogram to predict the survival and calibration curves were used to evaluate the accuracy. RESULTS: A total of 61 differentially expressed CCRGs and IRGs were screened out. We constructed a new risk model based on 8 genes, including ACVR1B, BIRC5, NR2E1, INSR, TGFA, BMP7, CD28, NUDT6. Subgroup analysis revealed the risk model accurately predicted the overall survival in LUAD patients with different clinical features and was correlated with immune cells infiltration. A nomogram based on the risk model exhibited excellent performance in survival prediction of LUAD. CONCLUSIONS: The 8 gene survival signature and nomogram in our study are effective and have potential clinical application to predict prognosis of LUAD. Frontiers Media S.A. 2021-06-04 /pmc/articles/PMC8212041/ /pubmed/34150632 http://dx.doi.org/10.3389/fonc.2021.666826 Text en Copyright © 2021 Chen, Song, Ye, Xu, Cheng, Zhang and Sun https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Oncology
Chen, Fangyu
Song, Jiahang
Ye, Ziqi
Xu, Bing
Cheng, Hongyan
Zhang, Shu
Sun, Xinchen
Integrated Analysis of Cell Cycle–Related and Immunity-Related Biomarker Signatures to Improve the Prognosis Prediction of Lung Adenocarcinoma
title Integrated Analysis of Cell Cycle–Related and Immunity-Related Biomarker Signatures to Improve the Prognosis Prediction of Lung Adenocarcinoma
title_full Integrated Analysis of Cell Cycle–Related and Immunity-Related Biomarker Signatures to Improve the Prognosis Prediction of Lung Adenocarcinoma
title_fullStr Integrated Analysis of Cell Cycle–Related and Immunity-Related Biomarker Signatures to Improve the Prognosis Prediction of Lung Adenocarcinoma
title_full_unstemmed Integrated Analysis of Cell Cycle–Related and Immunity-Related Biomarker Signatures to Improve the Prognosis Prediction of Lung Adenocarcinoma
title_short Integrated Analysis of Cell Cycle–Related and Immunity-Related Biomarker Signatures to Improve the Prognosis Prediction of Lung Adenocarcinoma
title_sort integrated analysis of cell cycle–related and immunity-related biomarker signatures to improve the prognosis prediction of lung adenocarcinoma
topic Oncology
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8212041/
https://www.ncbi.nlm.nih.gov/pubmed/34150632
http://dx.doi.org/10.3389/fonc.2021.666826
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