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Rapid 4D-MRI reconstruction using a deep radial convolutional neural network: Dracula

BACKGROUND AND PURPOSE: 4D and midposition MRI could inform plan adaptation in lung and abdominal MR-guided radiotherapy. We present deep learning-based solutions to overcome long 4D-MRI reconstruction times while maintaining high image quality and short scan times. METHODS: Two 3D U-net deep convol...

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Autores principales: Freedman, Joshua N., Gurney-Champion, Oliver J., Nill, Simeon, Shiarli, Anna-Maria, Bainbridge, Hannah E., Mandeville, Henry C., Koh, Dow-Mu, McDonald, Fiona, Kachelrieß, Marc, Oelfke, Uwe, Wetscherek, Andreas
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Elsevier Scientific Publishers 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8216429/
https://www.ncbi.nlm.nih.gov/pubmed/33812914
http://dx.doi.org/10.1016/j.radonc.2021.03.034
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author Freedman, Joshua N.
Gurney-Champion, Oliver J.
Nill, Simeon
Shiarli, Anna-Maria
Bainbridge, Hannah E.
Mandeville, Henry C.
Koh, Dow-Mu
McDonald, Fiona
Kachelrieß, Marc
Oelfke, Uwe
Wetscherek, Andreas
author_facet Freedman, Joshua N.
Gurney-Champion, Oliver J.
Nill, Simeon
Shiarli, Anna-Maria
Bainbridge, Hannah E.
Mandeville, Henry C.
Koh, Dow-Mu
McDonald, Fiona
Kachelrieß, Marc
Oelfke, Uwe
Wetscherek, Andreas
author_sort Freedman, Joshua N.
collection PubMed
description BACKGROUND AND PURPOSE: 4D and midposition MRI could inform plan adaptation in lung and abdominal MR-guided radiotherapy. We present deep learning-based solutions to overcome long 4D-MRI reconstruction times while maintaining high image quality and short scan times. METHODS: Two 3D U-net deep convolutional neural networks were trained to accelerate the 4D joint MoCo-HDTV reconstruction. For the first network, gridded and joint MoCo-HDTV-reconstructed 4D-MRI were used as input and target data, respectively, whereas the second network was trained to directly calculate the midposition image. For both networks, input and target data had dimensions of 256 × 256 voxels (2D) and 16 respiratory phases. Deep learning-based MRI were verified against joint MoCo-HDTV-reconstructed MRI using the structural similarity index (SSIM) and the naturalness image quality evaluator (NIQE). Moreover, two experienced observers contoured the gross tumour volume and scored the images in a blinded study. RESULTS: For 12 subjects, previously unseen by the networks, high-quality 4D and midposition MRI (1.25 × 1.25 × 3.3 mm(3)) were each reconstructed from gridded images in only 28 seconds per subject. Excellent agreement was found between deep-learning-based and joint MoCo-HDTV-reconstructed MRI (average SSIM ≥ 0.96, NIQE scores 7.94 and 5.66). Deep-learning-based 4D-MRI were clinically acceptable for target and organ-at-risk delineation. Tumour positions agreed within 0.7 mm on midposition images. CONCLUSION: Our results suggest that the joint MoCo-HDTV and midposition algorithms can each be approximated by a deep convolutional neural network. This rapid reconstruction of 4D and midposition MRI facilitates online treatment adaptation in thoracic or abdominal MR-guided radiotherapy.
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spelling pubmed-82164292021-06-25 Rapid 4D-MRI reconstruction using a deep radial convolutional neural network: Dracula Freedman, Joshua N. Gurney-Champion, Oliver J. Nill, Simeon Shiarli, Anna-Maria Bainbridge, Hannah E. Mandeville, Henry C. Koh, Dow-Mu McDonald, Fiona Kachelrieß, Marc Oelfke, Uwe Wetscherek, Andreas Radiother Oncol Original Article BACKGROUND AND PURPOSE: 4D and midposition MRI could inform plan adaptation in lung and abdominal MR-guided radiotherapy. We present deep learning-based solutions to overcome long 4D-MRI reconstruction times while maintaining high image quality and short scan times. METHODS: Two 3D U-net deep convolutional neural networks were trained to accelerate the 4D joint MoCo-HDTV reconstruction. For the first network, gridded and joint MoCo-HDTV-reconstructed 4D-MRI were used as input and target data, respectively, whereas the second network was trained to directly calculate the midposition image. For both networks, input and target data had dimensions of 256 × 256 voxels (2D) and 16 respiratory phases. Deep learning-based MRI were verified against joint MoCo-HDTV-reconstructed MRI using the structural similarity index (SSIM) and the naturalness image quality evaluator (NIQE). Moreover, two experienced observers contoured the gross tumour volume and scored the images in a blinded study. RESULTS: For 12 subjects, previously unseen by the networks, high-quality 4D and midposition MRI (1.25 × 1.25 × 3.3 mm(3)) were each reconstructed from gridded images in only 28 seconds per subject. Excellent agreement was found between deep-learning-based and joint MoCo-HDTV-reconstructed MRI (average SSIM ≥ 0.96, NIQE scores 7.94 and 5.66). Deep-learning-based 4D-MRI were clinically acceptable for target and organ-at-risk delineation. Tumour positions agreed within 0.7 mm on midposition images. CONCLUSION: Our results suggest that the joint MoCo-HDTV and midposition algorithms can each be approximated by a deep convolutional neural network. This rapid reconstruction of 4D and midposition MRI facilitates online treatment adaptation in thoracic or abdominal MR-guided radiotherapy. Elsevier Scientific Publishers 2021-06 /pmc/articles/PMC8216429/ /pubmed/33812914 http://dx.doi.org/10.1016/j.radonc.2021.03.034 Text en © 2021 The Authors https://creativecommons.org/licenses/by/4.0/This is an open access article under the CC BY license (http://creativecommons.org/licenses/by/4.0/).
spellingShingle Original Article
Freedman, Joshua N.
Gurney-Champion, Oliver J.
Nill, Simeon
Shiarli, Anna-Maria
Bainbridge, Hannah E.
Mandeville, Henry C.
Koh, Dow-Mu
McDonald, Fiona
Kachelrieß, Marc
Oelfke, Uwe
Wetscherek, Andreas
Rapid 4D-MRI reconstruction using a deep radial convolutional neural network: Dracula
title Rapid 4D-MRI reconstruction using a deep radial convolutional neural network: Dracula
title_full Rapid 4D-MRI reconstruction using a deep radial convolutional neural network: Dracula
title_fullStr Rapid 4D-MRI reconstruction using a deep radial convolutional neural network: Dracula
title_full_unstemmed Rapid 4D-MRI reconstruction using a deep radial convolutional neural network: Dracula
title_short Rapid 4D-MRI reconstruction using a deep radial convolutional neural network: Dracula
title_sort rapid 4d-mri reconstruction using a deep radial convolutional neural network: dracula
topic Original Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8216429/
https://www.ncbi.nlm.nih.gov/pubmed/33812914
http://dx.doi.org/10.1016/j.radonc.2021.03.034
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