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Deep learning for classification of pediatric chest radiographs by WHO’s standardized methodology

BACKGROUND: The World Health Organization (WHO)-defined radiological pneumonia is a preferred endpoint in pneumococcal vaccine efficacy and effectiveness studies in children. Automating the WHO methodology may support more widespread application of this endpoint. METHODS: We trained a deep learning...

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Autores principales: Chen, Yiyun, Roberts, Craig S., Ou, Wanmei, Petigara, Tanaz, Goldmacher, Gregory V., Fancourt, Nicholas, Knoll, Maria Deloria
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8216551/
https://www.ncbi.nlm.nih.gov/pubmed/34153076
http://dx.doi.org/10.1371/journal.pone.0253239
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author Chen, Yiyun
Roberts, Craig S.
Ou, Wanmei
Petigara, Tanaz
Goldmacher, Gregory V.
Fancourt, Nicholas
Knoll, Maria Deloria
author_facet Chen, Yiyun
Roberts, Craig S.
Ou, Wanmei
Petigara, Tanaz
Goldmacher, Gregory V.
Fancourt, Nicholas
Knoll, Maria Deloria
author_sort Chen, Yiyun
collection PubMed
description BACKGROUND: The World Health Organization (WHO)-defined radiological pneumonia is a preferred endpoint in pneumococcal vaccine efficacy and effectiveness studies in children. Automating the WHO methodology may support more widespread application of this endpoint. METHODS: We trained a deep learning model to classify pneumonia CXRs in children using the World Health Organization (WHO)’s standardized methodology. The model was pretrained on CheXpert, a dataset containing 224,316 adult CXRs, and fine-tuned on PERCH, a pediatric dataset containing 4,172 CXRs. The model was then tested on two pediatric CXR datasets released by WHO. We also compared the model’s performance to that of radiologists and pediatricians. RESULTS: The average area under the receiver operating characteristic curve (AUC) for primary endpoint pneumonia (PEP) across 10-fold validation of PERCH images was 0.928; average AUC after testing on WHO images was 0.977. The model’s classification performance was better on test images with high inter-observer agreement; however, the model still outperformed human assessments in AUC and precision-recall spaces on low agreement images. CONCLUSION: A deep learning model can classify pneumonia CXR images in children at a performance comparable to human readers. Our method lays a strong foundation for the potential inclusion of computer-aided readings of pediatric CXRs in vaccine trials and epidemiology studies.
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spelling pubmed-82165512021-07-01 Deep learning for classification of pediatric chest radiographs by WHO’s standardized methodology Chen, Yiyun Roberts, Craig S. Ou, Wanmei Petigara, Tanaz Goldmacher, Gregory V. Fancourt, Nicholas Knoll, Maria Deloria PLoS One Research Article BACKGROUND: The World Health Organization (WHO)-defined radiological pneumonia is a preferred endpoint in pneumococcal vaccine efficacy and effectiveness studies in children. Automating the WHO methodology may support more widespread application of this endpoint. METHODS: We trained a deep learning model to classify pneumonia CXRs in children using the World Health Organization (WHO)’s standardized methodology. The model was pretrained on CheXpert, a dataset containing 224,316 adult CXRs, and fine-tuned on PERCH, a pediatric dataset containing 4,172 CXRs. The model was then tested on two pediatric CXR datasets released by WHO. We also compared the model’s performance to that of radiologists and pediatricians. RESULTS: The average area under the receiver operating characteristic curve (AUC) for primary endpoint pneumonia (PEP) across 10-fold validation of PERCH images was 0.928; average AUC after testing on WHO images was 0.977. The model’s classification performance was better on test images with high inter-observer agreement; however, the model still outperformed human assessments in AUC and precision-recall spaces on low agreement images. CONCLUSION: A deep learning model can classify pneumonia CXR images in children at a performance comparable to human readers. Our method lays a strong foundation for the potential inclusion of computer-aided readings of pediatric CXRs in vaccine trials and epidemiology studies. Public Library of Science 2021-06-21 /pmc/articles/PMC8216551/ /pubmed/34153076 http://dx.doi.org/10.1371/journal.pone.0253239 Text en https://creativecommons.org/publicdomain/zero/1.0/This is an open access article, free of all copyright, and may be freely reproduced, distributed, transmitted, modified, built upon, or otherwise used by anyone for any lawful purpose. The work is made available under the Creative Commons CC0 (https://creativecommons.org/publicdomain/zero/1.0/) public domain dedication.
spellingShingle Research Article
Chen, Yiyun
Roberts, Craig S.
Ou, Wanmei
Petigara, Tanaz
Goldmacher, Gregory V.
Fancourt, Nicholas
Knoll, Maria Deloria
Deep learning for classification of pediatric chest radiographs by WHO’s standardized methodology
title Deep learning for classification of pediatric chest radiographs by WHO’s standardized methodology
title_full Deep learning for classification of pediatric chest radiographs by WHO’s standardized methodology
title_fullStr Deep learning for classification of pediatric chest radiographs by WHO’s standardized methodology
title_full_unstemmed Deep learning for classification of pediatric chest radiographs by WHO’s standardized methodology
title_short Deep learning for classification of pediatric chest radiographs by WHO’s standardized methodology
title_sort deep learning for classification of pediatric chest radiographs by who’s standardized methodology
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8216551/
https://www.ncbi.nlm.nih.gov/pubmed/34153076
http://dx.doi.org/10.1371/journal.pone.0253239
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