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Time series prediction of COVID-19 transmission in America using LSTM and XGBoost algorithms

In this paper, we establish daily confirmed infected cases prediction models for the time series data of America by applying both the long short-term memory (LSTM) and extreme gradient boosting (XGBoost) algorithms, and employ four performance parameters as MAE, MSE, RMSE, and MAPE to evaluate the e...

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Detalles Bibliográficos
Autores principales: Luo, Junling, Zhang, Zhongliang, Fu, Yao, Rao, Feng
Formato: Online Artículo Texto
Lenguaje:English
Publicado: The Author(s). Published by Elsevier B.V. 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8216863/
https://www.ncbi.nlm.nih.gov/pubmed/34178594
http://dx.doi.org/10.1016/j.rinp.2021.104462
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author Luo, Junling
Zhang, Zhongliang
Fu, Yao
Rao, Feng
author_facet Luo, Junling
Zhang, Zhongliang
Fu, Yao
Rao, Feng
author_sort Luo, Junling
collection PubMed
description In this paper, we establish daily confirmed infected cases prediction models for the time series data of America by applying both the long short-term memory (LSTM) and extreme gradient boosting (XGBoost) algorithms, and employ four performance parameters as MAE, MSE, RMSE, and MAPE to evaluate the effect of model fitting. LSTM is applied to reliably estimate accuracy due to the long-term attribute and diversity of COVID-19 epidemic data. Using XGBoost model, we conduct a sensitivity analysis to determine the robustness of predictive model to parameter features. Our results reveal that achieving a reduction in the contact rate between susceptible and infected individuals by isolated the uninfected individuals, can effectively reduce the number of daily confirmed cases. By combining the restrictive social distancing and contact tracing, the elimination of ongoing COVID-19 pandemic is possible. Our predictions are based on real time series data with reasonable assumptions, whereas the accurate course of epidemic heavily depends on how and when quarantine, isolation and precautionary measures are enforced.
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spelling pubmed-82168632021-06-23 Time series prediction of COVID-19 transmission in America using LSTM and XGBoost algorithms Luo, Junling Zhang, Zhongliang Fu, Yao Rao, Feng Results Phys Article In this paper, we establish daily confirmed infected cases prediction models for the time series data of America by applying both the long short-term memory (LSTM) and extreme gradient boosting (XGBoost) algorithms, and employ four performance parameters as MAE, MSE, RMSE, and MAPE to evaluate the effect of model fitting. LSTM is applied to reliably estimate accuracy due to the long-term attribute and diversity of COVID-19 epidemic data. Using XGBoost model, we conduct a sensitivity analysis to determine the robustness of predictive model to parameter features. Our results reveal that achieving a reduction in the contact rate between susceptible and infected individuals by isolated the uninfected individuals, can effectively reduce the number of daily confirmed cases. By combining the restrictive social distancing and contact tracing, the elimination of ongoing COVID-19 pandemic is possible. Our predictions are based on real time series data with reasonable assumptions, whereas the accurate course of epidemic heavily depends on how and when quarantine, isolation and precautionary measures are enforced. The Author(s). Published by Elsevier B.V. 2021-08 2021-06-22 /pmc/articles/PMC8216863/ /pubmed/34178594 http://dx.doi.org/10.1016/j.rinp.2021.104462 Text en © 2021 The Author(s) Since January 2020 Elsevier has created a COVID-19 resource centre with free information in English and Mandarin on the novel coronavirus COVID-19. The COVID-19 resource centre is hosted on Elsevier Connect, the company's public news and information website. Elsevier hereby grants permission to make all its COVID-19-related research that is available on the COVID-19 resource centre - including this research content - immediately available in PubMed Central and other publicly funded repositories, such as the WHO COVID database with rights for unrestricted research re-use and analyses in any form or by any means with acknowledgement of the original source. These permissions are granted for free by Elsevier for as long as the COVID-19 resource centre remains active.
spellingShingle Article
Luo, Junling
Zhang, Zhongliang
Fu, Yao
Rao, Feng
Time series prediction of COVID-19 transmission in America using LSTM and XGBoost algorithms
title Time series prediction of COVID-19 transmission in America using LSTM and XGBoost algorithms
title_full Time series prediction of COVID-19 transmission in America using LSTM and XGBoost algorithms
title_fullStr Time series prediction of COVID-19 transmission in America using LSTM and XGBoost algorithms
title_full_unstemmed Time series prediction of COVID-19 transmission in America using LSTM and XGBoost algorithms
title_short Time series prediction of COVID-19 transmission in America using LSTM and XGBoost algorithms
title_sort time series prediction of covid-19 transmission in america using lstm and xgboost algorithms
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8216863/
https://www.ncbi.nlm.nih.gov/pubmed/34178594
http://dx.doi.org/10.1016/j.rinp.2021.104462
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