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Time series prediction of COVID-19 transmission in America using LSTM and XGBoost algorithms
In this paper, we establish daily confirmed infected cases prediction models for the time series data of America by applying both the long short-term memory (LSTM) and extreme gradient boosting (XGBoost) algorithms, and employ four performance parameters as MAE, MSE, RMSE, and MAPE to evaluate the e...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
The Author(s). Published by Elsevier B.V.
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8216863/ https://www.ncbi.nlm.nih.gov/pubmed/34178594 http://dx.doi.org/10.1016/j.rinp.2021.104462 |
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author | Luo, Junling Zhang, Zhongliang Fu, Yao Rao, Feng |
author_facet | Luo, Junling Zhang, Zhongliang Fu, Yao Rao, Feng |
author_sort | Luo, Junling |
collection | PubMed |
description | In this paper, we establish daily confirmed infected cases prediction models for the time series data of America by applying both the long short-term memory (LSTM) and extreme gradient boosting (XGBoost) algorithms, and employ four performance parameters as MAE, MSE, RMSE, and MAPE to evaluate the effect of model fitting. LSTM is applied to reliably estimate accuracy due to the long-term attribute and diversity of COVID-19 epidemic data. Using XGBoost model, we conduct a sensitivity analysis to determine the robustness of predictive model to parameter features. Our results reveal that achieving a reduction in the contact rate between susceptible and infected individuals by isolated the uninfected individuals, can effectively reduce the number of daily confirmed cases. By combining the restrictive social distancing and contact tracing, the elimination of ongoing COVID-19 pandemic is possible. Our predictions are based on real time series data with reasonable assumptions, whereas the accurate course of epidemic heavily depends on how and when quarantine, isolation and precautionary measures are enforced. |
format | Online Article Text |
id | pubmed-8216863 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | The Author(s). Published by Elsevier B.V. |
record_format | MEDLINE/PubMed |
spelling | pubmed-82168632021-06-23 Time series prediction of COVID-19 transmission in America using LSTM and XGBoost algorithms Luo, Junling Zhang, Zhongliang Fu, Yao Rao, Feng Results Phys Article In this paper, we establish daily confirmed infected cases prediction models for the time series data of America by applying both the long short-term memory (LSTM) and extreme gradient boosting (XGBoost) algorithms, and employ four performance parameters as MAE, MSE, RMSE, and MAPE to evaluate the effect of model fitting. LSTM is applied to reliably estimate accuracy due to the long-term attribute and diversity of COVID-19 epidemic data. Using XGBoost model, we conduct a sensitivity analysis to determine the robustness of predictive model to parameter features. Our results reveal that achieving a reduction in the contact rate between susceptible and infected individuals by isolated the uninfected individuals, can effectively reduce the number of daily confirmed cases. By combining the restrictive social distancing and contact tracing, the elimination of ongoing COVID-19 pandemic is possible. Our predictions are based on real time series data with reasonable assumptions, whereas the accurate course of epidemic heavily depends on how and when quarantine, isolation and precautionary measures are enforced. The Author(s). Published by Elsevier B.V. 2021-08 2021-06-22 /pmc/articles/PMC8216863/ /pubmed/34178594 http://dx.doi.org/10.1016/j.rinp.2021.104462 Text en © 2021 The Author(s) Since January 2020 Elsevier has created a COVID-19 resource centre with free information in English and Mandarin on the novel coronavirus COVID-19. The COVID-19 resource centre is hosted on Elsevier Connect, the company's public news and information website. Elsevier hereby grants permission to make all its COVID-19-related research that is available on the COVID-19 resource centre - including this research content - immediately available in PubMed Central and other publicly funded repositories, such as the WHO COVID database with rights for unrestricted research re-use and analyses in any form or by any means with acknowledgement of the original source. These permissions are granted for free by Elsevier for as long as the COVID-19 resource centre remains active. |
spellingShingle | Article Luo, Junling Zhang, Zhongliang Fu, Yao Rao, Feng Time series prediction of COVID-19 transmission in America using LSTM and XGBoost algorithms |
title | Time series prediction of COVID-19 transmission in America using LSTM and XGBoost algorithms |
title_full | Time series prediction of COVID-19 transmission in America using LSTM and XGBoost algorithms |
title_fullStr | Time series prediction of COVID-19 transmission in America using LSTM and XGBoost algorithms |
title_full_unstemmed | Time series prediction of COVID-19 transmission in America using LSTM and XGBoost algorithms |
title_short | Time series prediction of COVID-19 transmission in America using LSTM and XGBoost algorithms |
title_sort | time series prediction of covid-19 transmission in america using lstm and xgboost algorithms |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8216863/ https://www.ncbi.nlm.nih.gov/pubmed/34178594 http://dx.doi.org/10.1016/j.rinp.2021.104462 |
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