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Relieving efforts in palm‐tree tissue sampling for population genetics analyses

1. The young leaves are the main source of nucleic acids for population genetic studies in palm‐trees; however, the access to this tissue may be limited by specific features of each species. Using root tissues as an alternative source of nucleic acids could facilitate the sampling in large populatio...

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Autor principal: Espinoza‐Ulloa, Sebastian A.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: John Wiley and Sons Inc. 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8216967/
https://www.ncbi.nlm.nih.gov/pubmed/34188863
http://dx.doi.org/10.1002/ece3.7624
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author Espinoza‐Ulloa, Sebastian A.
author_facet Espinoza‐Ulloa, Sebastian A.
author_sort Espinoza‐Ulloa, Sebastian A.
collection PubMed
description 1. The young leaves are the main source of nucleic acids for population genetic studies in palm‐trees; however, the access to this tissue may be limited by specific features of each species. Using root tissues as an alternative source of nucleic acids could facilitate the sampling in large populations. 2. This study tests root tissue viability as an alternative nucleic acid source (root versus. leaf) and explores different protocols (tissue storage and DNA extraction methods) to obtain high‐quality DNA samples. 3. The results showed no significant differences in DNA concentration (603.7 vs. 599.1 ng/μl) and quality ratios (A260/280:2.1 vs. 1.9, and A260/230:2.1 vs. 2.0) for the comparisons of tissue source (leaf vs. root) and DNA extraction method (manual vs. kit). For tissue storage method, DNA concentration was significantly higher for root tissues stored in 70% and 90% alcohol solutions (692.8 and 822.6 ng/μl, respectively) versus those obtained from leaf tissue (603.7 ng/μl); however, for the quality parameters, no differences were found. 4. Results showed the effective potential of using root tissue as an alternative source for nucleic acids, which could facilitate population sampling of palm‐tree species for future studies, and this methodological alternative could be applied to other plant systems with similar sampling challenges. ​
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spelling pubmed-82169672021-06-28 Relieving efforts in palm‐tree tissue sampling for population genetics analyses Espinoza‐Ulloa, Sebastian A. Ecol Evol Original Research 1. The young leaves are the main source of nucleic acids for population genetic studies in palm‐trees; however, the access to this tissue may be limited by specific features of each species. Using root tissues as an alternative source of nucleic acids could facilitate the sampling in large populations. 2. This study tests root tissue viability as an alternative nucleic acid source (root versus. leaf) and explores different protocols (tissue storage and DNA extraction methods) to obtain high‐quality DNA samples. 3. The results showed no significant differences in DNA concentration (603.7 vs. 599.1 ng/μl) and quality ratios (A260/280:2.1 vs. 1.9, and A260/230:2.1 vs. 2.0) for the comparisons of tissue source (leaf vs. root) and DNA extraction method (manual vs. kit). For tissue storage method, DNA concentration was significantly higher for root tissues stored in 70% and 90% alcohol solutions (692.8 and 822.6 ng/μl, respectively) versus those obtained from leaf tissue (603.7 ng/μl); however, for the quality parameters, no differences were found. 4. Results showed the effective potential of using root tissue as an alternative source for nucleic acids, which could facilitate population sampling of palm‐tree species for future studies, and this methodological alternative could be applied to other plant systems with similar sampling challenges. ​ John Wiley and Sons Inc. 2021-05-11 /pmc/articles/PMC8216967/ /pubmed/34188863 http://dx.doi.org/10.1002/ece3.7624 Text en © 2021 The Authors. Ecology and Evolution published by John Wiley & Sons Ltd. https://creativecommons.org/licenses/by/4.0/This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited.
spellingShingle Original Research
Espinoza‐Ulloa, Sebastian A.
Relieving efforts in palm‐tree tissue sampling for population genetics analyses
title Relieving efforts in palm‐tree tissue sampling for population genetics analyses
title_full Relieving efforts in palm‐tree tissue sampling for population genetics analyses
title_fullStr Relieving efforts in palm‐tree tissue sampling for population genetics analyses
title_full_unstemmed Relieving efforts in palm‐tree tissue sampling for population genetics analyses
title_short Relieving efforts in palm‐tree tissue sampling for population genetics analyses
title_sort relieving efforts in palm‐tree tissue sampling for population genetics analyses
topic Original Research
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8216967/
https://www.ncbi.nlm.nih.gov/pubmed/34188863
http://dx.doi.org/10.1002/ece3.7624
work_keys_str_mv AT espinozaulloasebastiana relievingeffortsinpalmtreetissuesamplingforpopulationgeneticsanalyses