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The risk of pancreatic adenocarcinoma following SARS-CoV family infection

COVID 19 disease has become a global catastrophe over the past year that has claimed the lives of over two million people around the world. Despite the introduction of vaccines against the disease, there is still a long way to completely eradicate it. There are concerns about the complications follo...

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Autores principales: Ebrahimi Sadrabadi, Amin, Bereimipour, Ahmad, Jalili, Arsalan, Gholipurmalekabadi, Mazaher, Farhadihosseinabadi, Behrouz, Seifalian, Alexander M.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8217230/
https://www.ncbi.nlm.nih.gov/pubmed/34155232
http://dx.doi.org/10.1038/s41598-021-92068-4
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author Ebrahimi Sadrabadi, Amin
Bereimipour, Ahmad
Jalili, Arsalan
Gholipurmalekabadi, Mazaher
Farhadihosseinabadi, Behrouz
Seifalian, Alexander M.
author_facet Ebrahimi Sadrabadi, Amin
Bereimipour, Ahmad
Jalili, Arsalan
Gholipurmalekabadi, Mazaher
Farhadihosseinabadi, Behrouz
Seifalian, Alexander M.
author_sort Ebrahimi Sadrabadi, Amin
collection PubMed
description COVID 19 disease has become a global catastrophe over the past year that has claimed the lives of over two million people around the world. Despite the introduction of vaccines against the disease, there is still a long way to completely eradicate it. There are concerns about the complications following infection with SARS-CoV-2. This research aimed to evaluate the possible correlation between infection with SARS-CoV viruses and cancer in an in-silico study model. To do this, the relevent dataset was selected from GEO database. Identification of differentially expressed genes among defined groups including SARS-CoV, SARS-dORF6, SARS-BatSRBD, and H1N1 were screened where the |Log FC| ≥ 1and p < 0.05 were considered statistically significant. Later, the pathway enrichment analysis and gene ontology (GO) were used by Enrichr and Shiny GO databases. Evaluation with STRING online was applied to predict the functional interactions of proteins, followed by Cytoscape analysis to identify the master genes. Finally, analysis with GEPIA2 server was carried out to reveal the possible correlation between candidate genes and cancer development. The results showed that the main molecular function of up- and down-regulated genes was “double-stranded RNA binding” and actin-binding, respectively. STRING and Cytoscape analysis presented four genes, PTEN, CREB1, CASP3, and SMAD3 as the key genes involved in cancer development. According to TCGA database results, these four genes were up-regulated notably in pancreatic adenocarcinoma. Our findings suggest that pancreatic adenocarcinoma is the most probably malignancy happening after infection with SARS-CoV family.
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spelling pubmed-82172302021-06-22 The risk of pancreatic adenocarcinoma following SARS-CoV family infection Ebrahimi Sadrabadi, Amin Bereimipour, Ahmad Jalili, Arsalan Gholipurmalekabadi, Mazaher Farhadihosseinabadi, Behrouz Seifalian, Alexander M. Sci Rep Article COVID 19 disease has become a global catastrophe over the past year that has claimed the lives of over two million people around the world. Despite the introduction of vaccines against the disease, there is still a long way to completely eradicate it. There are concerns about the complications following infection with SARS-CoV-2. This research aimed to evaluate the possible correlation between infection with SARS-CoV viruses and cancer in an in-silico study model. To do this, the relevent dataset was selected from GEO database. Identification of differentially expressed genes among defined groups including SARS-CoV, SARS-dORF6, SARS-BatSRBD, and H1N1 were screened where the |Log FC| ≥ 1and p < 0.05 were considered statistically significant. Later, the pathway enrichment analysis and gene ontology (GO) were used by Enrichr and Shiny GO databases. Evaluation with STRING online was applied to predict the functional interactions of proteins, followed by Cytoscape analysis to identify the master genes. Finally, analysis with GEPIA2 server was carried out to reveal the possible correlation between candidate genes and cancer development. The results showed that the main molecular function of up- and down-regulated genes was “double-stranded RNA binding” and actin-binding, respectively. STRING and Cytoscape analysis presented four genes, PTEN, CREB1, CASP3, and SMAD3 as the key genes involved in cancer development. According to TCGA database results, these four genes were up-regulated notably in pancreatic adenocarcinoma. Our findings suggest that pancreatic adenocarcinoma is the most probably malignancy happening after infection with SARS-CoV family. Nature Publishing Group UK 2021-06-21 /pmc/articles/PMC8217230/ /pubmed/34155232 http://dx.doi.org/10.1038/s41598-021-92068-4 Text en © The Author(s) 2021 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Article
Ebrahimi Sadrabadi, Amin
Bereimipour, Ahmad
Jalili, Arsalan
Gholipurmalekabadi, Mazaher
Farhadihosseinabadi, Behrouz
Seifalian, Alexander M.
The risk of pancreatic adenocarcinoma following SARS-CoV family infection
title The risk of pancreatic adenocarcinoma following SARS-CoV family infection
title_full The risk of pancreatic adenocarcinoma following SARS-CoV family infection
title_fullStr The risk of pancreatic adenocarcinoma following SARS-CoV family infection
title_full_unstemmed The risk of pancreatic adenocarcinoma following SARS-CoV family infection
title_short The risk of pancreatic adenocarcinoma following SARS-CoV family infection
title_sort risk of pancreatic adenocarcinoma following sars-cov family infection
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8217230/
https://www.ncbi.nlm.nih.gov/pubmed/34155232
http://dx.doi.org/10.1038/s41598-021-92068-4
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