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The risk of pancreatic adenocarcinoma following SARS-CoV family infection
COVID 19 disease has become a global catastrophe over the past year that has claimed the lives of over two million people around the world. Despite the introduction of vaccines against the disease, there is still a long way to completely eradicate it. There are concerns about the complications follo...
Autores principales: | , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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Nature Publishing Group UK
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8217230/ https://www.ncbi.nlm.nih.gov/pubmed/34155232 http://dx.doi.org/10.1038/s41598-021-92068-4 |
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author | Ebrahimi Sadrabadi, Amin Bereimipour, Ahmad Jalili, Arsalan Gholipurmalekabadi, Mazaher Farhadihosseinabadi, Behrouz Seifalian, Alexander M. |
author_facet | Ebrahimi Sadrabadi, Amin Bereimipour, Ahmad Jalili, Arsalan Gholipurmalekabadi, Mazaher Farhadihosseinabadi, Behrouz Seifalian, Alexander M. |
author_sort | Ebrahimi Sadrabadi, Amin |
collection | PubMed |
description | COVID 19 disease has become a global catastrophe over the past year that has claimed the lives of over two million people around the world. Despite the introduction of vaccines against the disease, there is still a long way to completely eradicate it. There are concerns about the complications following infection with SARS-CoV-2. This research aimed to evaluate the possible correlation between infection with SARS-CoV viruses and cancer in an in-silico study model. To do this, the relevent dataset was selected from GEO database. Identification of differentially expressed genes among defined groups including SARS-CoV, SARS-dORF6, SARS-BatSRBD, and H1N1 were screened where the |Log FC| ≥ 1and p < 0.05 were considered statistically significant. Later, the pathway enrichment analysis and gene ontology (GO) were used by Enrichr and Shiny GO databases. Evaluation with STRING online was applied to predict the functional interactions of proteins, followed by Cytoscape analysis to identify the master genes. Finally, analysis with GEPIA2 server was carried out to reveal the possible correlation between candidate genes and cancer development. The results showed that the main molecular function of up- and down-regulated genes was “double-stranded RNA binding” and actin-binding, respectively. STRING and Cytoscape analysis presented four genes, PTEN, CREB1, CASP3, and SMAD3 as the key genes involved in cancer development. According to TCGA database results, these four genes were up-regulated notably in pancreatic adenocarcinoma. Our findings suggest that pancreatic adenocarcinoma is the most probably malignancy happening after infection with SARS-CoV family. |
format | Online Article Text |
id | pubmed-8217230 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-82172302021-06-22 The risk of pancreatic adenocarcinoma following SARS-CoV family infection Ebrahimi Sadrabadi, Amin Bereimipour, Ahmad Jalili, Arsalan Gholipurmalekabadi, Mazaher Farhadihosseinabadi, Behrouz Seifalian, Alexander M. Sci Rep Article COVID 19 disease has become a global catastrophe over the past year that has claimed the lives of over two million people around the world. Despite the introduction of vaccines against the disease, there is still a long way to completely eradicate it. There are concerns about the complications following infection with SARS-CoV-2. This research aimed to evaluate the possible correlation between infection with SARS-CoV viruses and cancer in an in-silico study model. To do this, the relevent dataset was selected from GEO database. Identification of differentially expressed genes among defined groups including SARS-CoV, SARS-dORF6, SARS-BatSRBD, and H1N1 were screened where the |Log FC| ≥ 1and p < 0.05 were considered statistically significant. Later, the pathway enrichment analysis and gene ontology (GO) were used by Enrichr and Shiny GO databases. Evaluation with STRING online was applied to predict the functional interactions of proteins, followed by Cytoscape analysis to identify the master genes. Finally, analysis with GEPIA2 server was carried out to reveal the possible correlation between candidate genes and cancer development. The results showed that the main molecular function of up- and down-regulated genes was “double-stranded RNA binding” and actin-binding, respectively. STRING and Cytoscape analysis presented four genes, PTEN, CREB1, CASP3, and SMAD3 as the key genes involved in cancer development. According to TCGA database results, these four genes were up-regulated notably in pancreatic adenocarcinoma. Our findings suggest that pancreatic adenocarcinoma is the most probably malignancy happening after infection with SARS-CoV family. Nature Publishing Group UK 2021-06-21 /pmc/articles/PMC8217230/ /pubmed/34155232 http://dx.doi.org/10.1038/s41598-021-92068-4 Text en © The Author(s) 2021 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . |
spellingShingle | Article Ebrahimi Sadrabadi, Amin Bereimipour, Ahmad Jalili, Arsalan Gholipurmalekabadi, Mazaher Farhadihosseinabadi, Behrouz Seifalian, Alexander M. The risk of pancreatic adenocarcinoma following SARS-CoV family infection |
title | The risk of pancreatic adenocarcinoma following SARS-CoV family infection |
title_full | The risk of pancreatic adenocarcinoma following SARS-CoV family infection |
title_fullStr | The risk of pancreatic adenocarcinoma following SARS-CoV family infection |
title_full_unstemmed | The risk of pancreatic adenocarcinoma following SARS-CoV family infection |
title_short | The risk of pancreatic adenocarcinoma following SARS-CoV family infection |
title_sort | risk of pancreatic adenocarcinoma following sars-cov family infection |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8217230/ https://www.ncbi.nlm.nih.gov/pubmed/34155232 http://dx.doi.org/10.1038/s41598-021-92068-4 |
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