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Full-length transcriptome analysis provides new insights into the early bolting occurrence in medicinal Angelica sinensis
Angelica sinensis (Oliv.) Diels root part is an integral component of traditional Chinese medicine, widely prescribed to improve blood circulation and blood stasis. However, early bolting of A. sinensis compromises the quality of the roots and hence is a major limitation for yield of medicinal mater...
Autores principales: | , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group UK
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8217430/ https://www.ncbi.nlm.nih.gov/pubmed/34155325 http://dx.doi.org/10.1038/s41598-021-92494-4 |
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author | Gao, Xue Guo, Fengxia Chen, Yuan Bai, Gang Liu, Yuxiao Jin, Jianqin Wang, Qing |
author_facet | Gao, Xue Guo, Fengxia Chen, Yuan Bai, Gang Liu, Yuxiao Jin, Jianqin Wang, Qing |
author_sort | Gao, Xue |
collection | PubMed |
description | Angelica sinensis (Oliv.) Diels root part is an integral component of traditional Chinese medicine, widely prescribed to improve blood circulation and blood stasis. However, early bolting of A. sinensis compromises the quality of the roots and hence is a major limitation for yield of medicinal materials. To date, little information about the molecular mechanisms underlying bolting is available for this important medicinal plant. To identify genes putatively involved in early bolting, we have conducted the transcriptome analysis of the shoot tips of the early-bolting plants and non-bolting (normal) plants of A. sinensis, respectively, using a combination of third-generation sequencing and next-generation sequencing. A total of 43,438 non-redundant transcripts were collected and 475 unique differentially expressed genes (DEGs) were identified. Gene annotation and functional analyses revealed that DEGs were highly involved in plant hormone signaling and biosynthesis pathways, three main flowering pathways, pollen formation, and very-long-chain fatty acids biosynthesis pathways. The levels of endogenous hormones were also changed significantly in the early bolting stage of A. sinensis. This study provided new insights into the transcriptomic control of early bolting in A. sinensis, which could be further applied to enhance the yield of medicinally important raw materials. |
format | Online Article Text |
id | pubmed-8217430 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-82174302021-06-22 Full-length transcriptome analysis provides new insights into the early bolting occurrence in medicinal Angelica sinensis Gao, Xue Guo, Fengxia Chen, Yuan Bai, Gang Liu, Yuxiao Jin, Jianqin Wang, Qing Sci Rep Article Angelica sinensis (Oliv.) Diels root part is an integral component of traditional Chinese medicine, widely prescribed to improve blood circulation and blood stasis. However, early bolting of A. sinensis compromises the quality of the roots and hence is a major limitation for yield of medicinal materials. To date, little information about the molecular mechanisms underlying bolting is available for this important medicinal plant. To identify genes putatively involved in early bolting, we have conducted the transcriptome analysis of the shoot tips of the early-bolting plants and non-bolting (normal) plants of A. sinensis, respectively, using a combination of third-generation sequencing and next-generation sequencing. A total of 43,438 non-redundant transcripts were collected and 475 unique differentially expressed genes (DEGs) were identified. Gene annotation and functional analyses revealed that DEGs were highly involved in plant hormone signaling and biosynthesis pathways, three main flowering pathways, pollen formation, and very-long-chain fatty acids biosynthesis pathways. The levels of endogenous hormones were also changed significantly in the early bolting stage of A. sinensis. This study provided new insights into the transcriptomic control of early bolting in A. sinensis, which could be further applied to enhance the yield of medicinally important raw materials. Nature Publishing Group UK 2021-06-21 /pmc/articles/PMC8217430/ /pubmed/34155325 http://dx.doi.org/10.1038/s41598-021-92494-4 Text en © The Author(s) 2021 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . |
spellingShingle | Article Gao, Xue Guo, Fengxia Chen, Yuan Bai, Gang Liu, Yuxiao Jin, Jianqin Wang, Qing Full-length transcriptome analysis provides new insights into the early bolting occurrence in medicinal Angelica sinensis |
title | Full-length transcriptome analysis provides new insights into the early bolting occurrence in medicinal Angelica sinensis |
title_full | Full-length transcriptome analysis provides new insights into the early bolting occurrence in medicinal Angelica sinensis |
title_fullStr | Full-length transcriptome analysis provides new insights into the early bolting occurrence in medicinal Angelica sinensis |
title_full_unstemmed | Full-length transcriptome analysis provides new insights into the early bolting occurrence in medicinal Angelica sinensis |
title_short | Full-length transcriptome analysis provides new insights into the early bolting occurrence in medicinal Angelica sinensis |
title_sort | full-length transcriptome analysis provides new insights into the early bolting occurrence in medicinal angelica sinensis |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8217430/ https://www.ncbi.nlm.nih.gov/pubmed/34155325 http://dx.doi.org/10.1038/s41598-021-92494-4 |
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