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Single-Cell RNA-seq Identification of the Cellular Molecular Characteristics of Sporadic Bilateral Clear Cell Renal Cell Carcinoma
Bilateral renal cell carcinoma (RCC) is a rare disease that can be classified as either familial or sporadic. Studying the cellular molecular characteristics of sporadic bilateral RCC is important to provide guidance for clinical treatment. Cellular molecular characteristics can be expressed at the...
Autores principales: | , , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Frontiers Media S.A.
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8217644/ https://www.ncbi.nlm.nih.gov/pubmed/34168986 http://dx.doi.org/10.3389/fonc.2021.659251 |
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author | Yu, Zhenyuan Lu, Wenhao Su, Cheng Lv, Yufang Ye, Yu Guo, Bingqian Liu, Deyun Yan, Haibiao Mi, Hua Li, Tianyu Zhang, Qingyun Cheng, Jiwen Mo, Zengnan |
author_facet | Yu, Zhenyuan Lu, Wenhao Su, Cheng Lv, Yufang Ye, Yu Guo, Bingqian Liu, Deyun Yan, Haibiao Mi, Hua Li, Tianyu Zhang, Qingyun Cheng, Jiwen Mo, Zengnan |
author_sort | Yu, Zhenyuan |
collection | PubMed |
description | Bilateral renal cell carcinoma (RCC) is a rare disease that can be classified as either familial or sporadic. Studying the cellular molecular characteristics of sporadic bilateral RCC is important to provide guidance for clinical treatment. Cellular molecular characteristics can be expressed at the RNA level, especially at the single-cell degree. Single-cell RNA sequencing (scRNA-seq) was performed on bilateral clear cell RCC (ccRCC). A total of 3,575 and 3,568 high-quality single-cell transcriptome data were captured from the left and right tumour tissues, respectively. Gene characteristics were identified by comparing left and right tumours at the scRNA level. The complex cellular environment of bilateral ccRCC was presented by using scRNA-seq. Single-cell transcriptomic analysis revealed high similarity in gene expression among most of the cell types of bilateral RCCs but significant differences in gene expression among different site tumour cells. Additionally, the potential biological function of different tumour cell types was determined by gene ontology (GO) analysis. The transcriptome characteristics of tumour tissues in different locations at the single-cell transcriptome level were revealed through the scRNA-seq of bilateral sporadic ccRCC. This work provides new insights into the diagnosis and treatment of bilateral RCC. |
format | Online Article Text |
id | pubmed-8217644 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | Frontiers Media S.A. |
record_format | MEDLINE/PubMed |
spelling | pubmed-82176442021-06-23 Single-Cell RNA-seq Identification of the Cellular Molecular Characteristics of Sporadic Bilateral Clear Cell Renal Cell Carcinoma Yu, Zhenyuan Lu, Wenhao Su, Cheng Lv, Yufang Ye, Yu Guo, Bingqian Liu, Deyun Yan, Haibiao Mi, Hua Li, Tianyu Zhang, Qingyun Cheng, Jiwen Mo, Zengnan Front Oncol Oncology Bilateral renal cell carcinoma (RCC) is a rare disease that can be classified as either familial or sporadic. Studying the cellular molecular characteristics of sporadic bilateral RCC is important to provide guidance for clinical treatment. Cellular molecular characteristics can be expressed at the RNA level, especially at the single-cell degree. Single-cell RNA sequencing (scRNA-seq) was performed on bilateral clear cell RCC (ccRCC). A total of 3,575 and 3,568 high-quality single-cell transcriptome data were captured from the left and right tumour tissues, respectively. Gene characteristics were identified by comparing left and right tumours at the scRNA level. The complex cellular environment of bilateral ccRCC was presented by using scRNA-seq. Single-cell transcriptomic analysis revealed high similarity in gene expression among most of the cell types of bilateral RCCs but significant differences in gene expression among different site tumour cells. Additionally, the potential biological function of different tumour cell types was determined by gene ontology (GO) analysis. The transcriptome characteristics of tumour tissues in different locations at the single-cell transcriptome level were revealed through the scRNA-seq of bilateral sporadic ccRCC. This work provides new insights into the diagnosis and treatment of bilateral RCC. Frontiers Media S.A. 2021-06-08 /pmc/articles/PMC8217644/ /pubmed/34168986 http://dx.doi.org/10.3389/fonc.2021.659251 Text en Copyright © 2021 Yu, Lu, Su, Lv, Ye, Guo, Liu, Yan, Mi, Li, Zhang, Cheng and Mo https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. |
spellingShingle | Oncology Yu, Zhenyuan Lu, Wenhao Su, Cheng Lv, Yufang Ye, Yu Guo, Bingqian Liu, Deyun Yan, Haibiao Mi, Hua Li, Tianyu Zhang, Qingyun Cheng, Jiwen Mo, Zengnan Single-Cell RNA-seq Identification of the Cellular Molecular Characteristics of Sporadic Bilateral Clear Cell Renal Cell Carcinoma |
title | Single-Cell RNA-seq Identification of the Cellular Molecular Characteristics of Sporadic Bilateral Clear Cell Renal Cell Carcinoma |
title_full | Single-Cell RNA-seq Identification of the Cellular Molecular Characteristics of Sporadic Bilateral Clear Cell Renal Cell Carcinoma |
title_fullStr | Single-Cell RNA-seq Identification of the Cellular Molecular Characteristics of Sporadic Bilateral Clear Cell Renal Cell Carcinoma |
title_full_unstemmed | Single-Cell RNA-seq Identification of the Cellular Molecular Characteristics of Sporadic Bilateral Clear Cell Renal Cell Carcinoma |
title_short | Single-Cell RNA-seq Identification of the Cellular Molecular Characteristics of Sporadic Bilateral Clear Cell Renal Cell Carcinoma |
title_sort | single-cell rna-seq identification of the cellular molecular characteristics of sporadic bilateral clear cell renal cell carcinoma |
topic | Oncology |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8217644/ https://www.ncbi.nlm.nih.gov/pubmed/34168986 http://dx.doi.org/10.3389/fonc.2021.659251 |
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