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Single-Cell RNA-seq Identification of the Cellular Molecular Characteristics of Sporadic Bilateral Clear Cell Renal Cell Carcinoma

Bilateral renal cell carcinoma (RCC) is a rare disease that can be classified as either familial or sporadic. Studying the cellular molecular characteristics of sporadic bilateral RCC is important to provide guidance for clinical treatment. Cellular molecular characteristics can be expressed at the...

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Autores principales: Yu, Zhenyuan, Lu, Wenhao, Su, Cheng, Lv, Yufang, Ye, Yu, Guo, Bingqian, Liu, Deyun, Yan, Haibiao, Mi, Hua, Li, Tianyu, Zhang, Qingyun, Cheng, Jiwen, Mo, Zengnan
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8217644/
https://www.ncbi.nlm.nih.gov/pubmed/34168986
http://dx.doi.org/10.3389/fonc.2021.659251
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author Yu, Zhenyuan
Lu, Wenhao
Su, Cheng
Lv, Yufang
Ye, Yu
Guo, Bingqian
Liu, Deyun
Yan, Haibiao
Mi, Hua
Li, Tianyu
Zhang, Qingyun
Cheng, Jiwen
Mo, Zengnan
author_facet Yu, Zhenyuan
Lu, Wenhao
Su, Cheng
Lv, Yufang
Ye, Yu
Guo, Bingqian
Liu, Deyun
Yan, Haibiao
Mi, Hua
Li, Tianyu
Zhang, Qingyun
Cheng, Jiwen
Mo, Zengnan
author_sort Yu, Zhenyuan
collection PubMed
description Bilateral renal cell carcinoma (RCC) is a rare disease that can be classified as either familial or sporadic. Studying the cellular molecular characteristics of sporadic bilateral RCC is important to provide guidance for clinical treatment. Cellular molecular characteristics can be expressed at the RNA level, especially at the single-cell degree. Single-cell RNA sequencing (scRNA-seq) was performed on bilateral clear cell RCC (ccRCC). A total of 3,575 and 3,568 high-quality single-cell transcriptome data were captured from the left and right tumour tissues, respectively. Gene characteristics were identified by comparing left and right tumours at the scRNA level. The complex cellular environment of bilateral ccRCC was presented by using scRNA-seq. Single-cell transcriptomic analysis revealed high similarity in gene expression among most of the cell types of bilateral RCCs but significant differences in gene expression among different site tumour cells. Additionally, the potential biological function of different tumour cell types was determined by gene ontology (GO) analysis. The transcriptome characteristics of tumour tissues in different locations at the single-cell transcriptome level were revealed through the scRNA-seq of bilateral sporadic ccRCC. This work provides new insights into the diagnosis and treatment of bilateral RCC.
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spelling pubmed-82176442021-06-23 Single-Cell RNA-seq Identification of the Cellular Molecular Characteristics of Sporadic Bilateral Clear Cell Renal Cell Carcinoma Yu, Zhenyuan Lu, Wenhao Su, Cheng Lv, Yufang Ye, Yu Guo, Bingqian Liu, Deyun Yan, Haibiao Mi, Hua Li, Tianyu Zhang, Qingyun Cheng, Jiwen Mo, Zengnan Front Oncol Oncology Bilateral renal cell carcinoma (RCC) is a rare disease that can be classified as either familial or sporadic. Studying the cellular molecular characteristics of sporadic bilateral RCC is important to provide guidance for clinical treatment. Cellular molecular characteristics can be expressed at the RNA level, especially at the single-cell degree. Single-cell RNA sequencing (scRNA-seq) was performed on bilateral clear cell RCC (ccRCC). A total of 3,575 and 3,568 high-quality single-cell transcriptome data were captured from the left and right tumour tissues, respectively. Gene characteristics were identified by comparing left and right tumours at the scRNA level. The complex cellular environment of bilateral ccRCC was presented by using scRNA-seq. Single-cell transcriptomic analysis revealed high similarity in gene expression among most of the cell types of bilateral RCCs but significant differences in gene expression among different site tumour cells. Additionally, the potential biological function of different tumour cell types was determined by gene ontology (GO) analysis. The transcriptome characteristics of tumour tissues in different locations at the single-cell transcriptome level were revealed through the scRNA-seq of bilateral sporadic ccRCC. This work provides new insights into the diagnosis and treatment of bilateral RCC. Frontiers Media S.A. 2021-06-08 /pmc/articles/PMC8217644/ /pubmed/34168986 http://dx.doi.org/10.3389/fonc.2021.659251 Text en Copyright © 2021 Yu, Lu, Su, Lv, Ye, Guo, Liu, Yan, Mi, Li, Zhang, Cheng and Mo https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Oncology
Yu, Zhenyuan
Lu, Wenhao
Su, Cheng
Lv, Yufang
Ye, Yu
Guo, Bingqian
Liu, Deyun
Yan, Haibiao
Mi, Hua
Li, Tianyu
Zhang, Qingyun
Cheng, Jiwen
Mo, Zengnan
Single-Cell RNA-seq Identification of the Cellular Molecular Characteristics of Sporadic Bilateral Clear Cell Renal Cell Carcinoma
title Single-Cell RNA-seq Identification of the Cellular Molecular Characteristics of Sporadic Bilateral Clear Cell Renal Cell Carcinoma
title_full Single-Cell RNA-seq Identification of the Cellular Molecular Characteristics of Sporadic Bilateral Clear Cell Renal Cell Carcinoma
title_fullStr Single-Cell RNA-seq Identification of the Cellular Molecular Characteristics of Sporadic Bilateral Clear Cell Renal Cell Carcinoma
title_full_unstemmed Single-Cell RNA-seq Identification of the Cellular Molecular Characteristics of Sporadic Bilateral Clear Cell Renal Cell Carcinoma
title_short Single-Cell RNA-seq Identification of the Cellular Molecular Characteristics of Sporadic Bilateral Clear Cell Renal Cell Carcinoma
title_sort single-cell rna-seq identification of the cellular molecular characteristics of sporadic bilateral clear cell renal cell carcinoma
topic Oncology
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8217644/
https://www.ncbi.nlm.nih.gov/pubmed/34168986
http://dx.doi.org/10.3389/fonc.2021.659251
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