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Zeta-carbonic anhydrases show CS(2) hydrolase activity: A new metabolic carbon acquisition pathway in diatoms?

CDCA1 is a very peculiar member of the Carbonic Anhydrase (CA) family. It has been the first enzyme to show an efficient utilization of Cd(II) ions in Nature and a unique adaptation capability to live on the surface ocean. Indeed, in this environment, which is extremely depleted in essential metal i...

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Autores principales: Alterio, Vincenzo, Langella, Emma, Buonanno, Martina, Esposito, Davide, Nocentini, Alessio, Berrino, Emanuela, Bua, Silvia, Polentarutti, Maurizio, Supuran, Claudiu T., Monti, Simona Maria, De Simone, Giuseppina
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Research Network of Computational and Structural Biotechnology 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8217695/
https://www.ncbi.nlm.nih.gov/pubmed/34194668
http://dx.doi.org/10.1016/j.csbj.2021.05.057
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author Alterio, Vincenzo
Langella, Emma
Buonanno, Martina
Esposito, Davide
Nocentini, Alessio
Berrino, Emanuela
Bua, Silvia
Polentarutti, Maurizio
Supuran, Claudiu T.
Monti, Simona Maria
De Simone, Giuseppina
author_facet Alterio, Vincenzo
Langella, Emma
Buonanno, Martina
Esposito, Davide
Nocentini, Alessio
Berrino, Emanuela
Bua, Silvia
Polentarutti, Maurizio
Supuran, Claudiu T.
Monti, Simona Maria
De Simone, Giuseppina
author_sort Alterio, Vincenzo
collection PubMed
description CDCA1 is a very peculiar member of the Carbonic Anhydrase (CA) family. It has been the first enzyme to show an efficient utilization of Cd(II) ions in Nature and a unique adaptation capability to live on the surface ocean. Indeed, in this environment, which is extremely depleted in essential metal ions, CDCA1 can utilize Zn(II) or Cd(II) as catalytic metal to support the metabolic needs of fast growing diatoms. In this paper we demonstrate a further catalytic versatility of this enzyme by using a combination of X-ray crystallography, molecular dynamics simulations and enzymatic experiments. First we identified the CO(2) binding site and the way in which this substrate travels from the environment to the enzyme active site. Then, starting from the observation of a structural similarity with the substrate entry route of CS(2) hydrolase from Acidanius A1-3, we hypothesized and demonstrated that also CS(2) is a substrate for CDCA1. This finding is new and unexpected since until now only few CS(2) hydrolases have been characterized, and none of them is reported to have any CO(2) hydratase action. The physiological implications of this supplementary catalytic activity still remain to be unveiled. We suggest here that it could represent another ability of diatoms expressing CDCA1 to adapt to the external environment. Indeed, the ability of this enzyme to convert CS(2) could represent an alternative source of carbon acquisition for diatoms, in addition to CO(2).
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spelling pubmed-82176952021-06-29 Zeta-carbonic anhydrases show CS(2) hydrolase activity: A new metabolic carbon acquisition pathway in diatoms? Alterio, Vincenzo Langella, Emma Buonanno, Martina Esposito, Davide Nocentini, Alessio Berrino, Emanuela Bua, Silvia Polentarutti, Maurizio Supuran, Claudiu T. Monti, Simona Maria De Simone, Giuseppina Comput Struct Biotechnol J Research Article CDCA1 is a very peculiar member of the Carbonic Anhydrase (CA) family. It has been the first enzyme to show an efficient utilization of Cd(II) ions in Nature and a unique adaptation capability to live on the surface ocean. Indeed, in this environment, which is extremely depleted in essential metal ions, CDCA1 can utilize Zn(II) or Cd(II) as catalytic metal to support the metabolic needs of fast growing diatoms. In this paper we demonstrate a further catalytic versatility of this enzyme by using a combination of X-ray crystallography, molecular dynamics simulations and enzymatic experiments. First we identified the CO(2) binding site and the way in which this substrate travels from the environment to the enzyme active site. Then, starting from the observation of a structural similarity with the substrate entry route of CS(2) hydrolase from Acidanius A1-3, we hypothesized and demonstrated that also CS(2) is a substrate for CDCA1. This finding is new and unexpected since until now only few CS(2) hydrolases have been characterized, and none of them is reported to have any CO(2) hydratase action. The physiological implications of this supplementary catalytic activity still remain to be unveiled. We suggest here that it could represent another ability of diatoms expressing CDCA1 to adapt to the external environment. Indeed, the ability of this enzyme to convert CS(2) could represent an alternative source of carbon acquisition for diatoms, in addition to CO(2). Research Network of Computational and Structural Biotechnology 2021-06-05 /pmc/articles/PMC8217695/ /pubmed/34194668 http://dx.doi.org/10.1016/j.csbj.2021.05.057 Text en © 2021 The Authors. Published by Elsevier B.V. on behalf of Research Network of Computational and Structural Biotechnology. https://creativecommons.org/licenses/by-nc-nd/4.0/This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/4.0/).
spellingShingle Research Article
Alterio, Vincenzo
Langella, Emma
Buonanno, Martina
Esposito, Davide
Nocentini, Alessio
Berrino, Emanuela
Bua, Silvia
Polentarutti, Maurizio
Supuran, Claudiu T.
Monti, Simona Maria
De Simone, Giuseppina
Zeta-carbonic anhydrases show CS(2) hydrolase activity: A new metabolic carbon acquisition pathway in diatoms?
title Zeta-carbonic anhydrases show CS(2) hydrolase activity: A new metabolic carbon acquisition pathway in diatoms?
title_full Zeta-carbonic anhydrases show CS(2) hydrolase activity: A new metabolic carbon acquisition pathway in diatoms?
title_fullStr Zeta-carbonic anhydrases show CS(2) hydrolase activity: A new metabolic carbon acquisition pathway in diatoms?
title_full_unstemmed Zeta-carbonic anhydrases show CS(2) hydrolase activity: A new metabolic carbon acquisition pathway in diatoms?
title_short Zeta-carbonic anhydrases show CS(2) hydrolase activity: A new metabolic carbon acquisition pathway in diatoms?
title_sort zeta-carbonic anhydrases show cs(2) hydrolase activity: a new metabolic carbon acquisition pathway in diatoms?
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8217695/
https://www.ncbi.nlm.nih.gov/pubmed/34194668
http://dx.doi.org/10.1016/j.csbj.2021.05.057
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