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Methodological framework for radiomics applications in Hodgkin’s lymphoma
BACKGROUND: According to published data, radiomics features differ between lesions of refractory/relapsing HL patients from those of long-term responders. However, several methodological aspects have not been elucidated yet. PURPOSE: The study aimed at setting up a methodological framework in radiom...
Autores principales: | , , , , , , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Springer International Publishing
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8218114/ https://www.ncbi.nlm.nih.gov/pubmed/34191173 http://dx.doi.org/10.1186/s41824-020-00078-8 |
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author | Sollini, Martina Kirienko, Margarita Cavinato, Lara Ricci, Francesca Biroli, Matteo Ieva, Francesca Calderoni, Letizia Tabacchi, Elena Nanni, Cristina Zinzani, Pier Luigi Fanti, Stefano Guidetti, Anna Alessi, Alessandra Corradini, Paolo Seregni, Ettore Carlo-Stella, Carmelo Chiti, Arturo |
author_facet | Sollini, Martina Kirienko, Margarita Cavinato, Lara Ricci, Francesca Biroli, Matteo Ieva, Francesca Calderoni, Letizia Tabacchi, Elena Nanni, Cristina Zinzani, Pier Luigi Fanti, Stefano Guidetti, Anna Alessi, Alessandra Corradini, Paolo Seregni, Ettore Carlo-Stella, Carmelo Chiti, Arturo |
author_sort | Sollini, Martina |
collection | PubMed |
description | BACKGROUND: According to published data, radiomics features differ between lesions of refractory/relapsing HL patients from those of long-term responders. However, several methodological aspects have not been elucidated yet. PURPOSE: The study aimed at setting up a methodological framework in radiomics applications in Hodgkin’s lymphoma (HL), especially at (a) developing a novel feature selection approach, (b) evaluating radiomic intra-patient lesions’ similarity, and (c) classifying relapsing refractory (R/R) vs non-(R/R) patients. METHODS: We retrospectively included 85 patients (male:female = 52:33; median age 35 years, range 19–74). LIFEx (www.lifexsoft.org) was used for [(18)F]FDG-PET/CT segmentation and feature extraction. Features were a-priori selected if they were highly correlated or uncorrelated to the volume. Principal component analysis-transformed features were used to build the fingerprints that were tested to assess lesions’ similarity, using the silhouette. For intra-patient similarity analysis, we used patients having multiple lesions only. To classify patients as non-R/R and R/R, the fingerprint considering one single lesion (fingerprint_One) and all lesions (fingerprint_All) was tested using Random Undersampling Boosting of Tree Ensemble (RUBTE). RESULTS: HL fingerprints included up to 15 features. Intra-patient lesion similarity analysis resulted in mean/median silhouette values below 0.5 (low similarity especially in the non-R/R group). In the test set, the fingerprint_One classification accuracy was 62% (78% sensitivity and 53% specificity); the classification by RUBTE using fingerprint_All resulted in 82% accuracy (70% sensitivity and 88% specificity). CONCLUSIONS: Lesion similarity analysis was developed, and it allowed to demonstrate that HL lesions were not homogeneous within patients in terms of radiomics signature. Therefore, a random target lesion selection should not be adopted for radiomics applications. Moreover, the classifier to predict R/R vs non-R/R performed the best when all the lesions were used. |
format | Online Article Text |
id | pubmed-8218114 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | Springer International Publishing |
record_format | MEDLINE/PubMed |
spelling | pubmed-82181142021-06-24 Methodological framework for radiomics applications in Hodgkin’s lymphoma Sollini, Martina Kirienko, Margarita Cavinato, Lara Ricci, Francesca Biroli, Matteo Ieva, Francesca Calderoni, Letizia Tabacchi, Elena Nanni, Cristina Zinzani, Pier Luigi Fanti, Stefano Guidetti, Anna Alessi, Alessandra Corradini, Paolo Seregni, Ettore Carlo-Stella, Carmelo Chiti, Arturo Eur J Hybrid Imaging Original Article BACKGROUND: According to published data, radiomics features differ between lesions of refractory/relapsing HL patients from those of long-term responders. However, several methodological aspects have not been elucidated yet. PURPOSE: The study aimed at setting up a methodological framework in radiomics applications in Hodgkin’s lymphoma (HL), especially at (a) developing a novel feature selection approach, (b) evaluating radiomic intra-patient lesions’ similarity, and (c) classifying relapsing refractory (R/R) vs non-(R/R) patients. METHODS: We retrospectively included 85 patients (male:female = 52:33; median age 35 years, range 19–74). LIFEx (www.lifexsoft.org) was used for [(18)F]FDG-PET/CT segmentation and feature extraction. Features were a-priori selected if they were highly correlated or uncorrelated to the volume. Principal component analysis-transformed features were used to build the fingerprints that were tested to assess lesions’ similarity, using the silhouette. For intra-patient similarity analysis, we used patients having multiple lesions only. To classify patients as non-R/R and R/R, the fingerprint considering one single lesion (fingerprint_One) and all lesions (fingerprint_All) was tested using Random Undersampling Boosting of Tree Ensemble (RUBTE). RESULTS: HL fingerprints included up to 15 features. Intra-patient lesion similarity analysis resulted in mean/median silhouette values below 0.5 (low similarity especially in the non-R/R group). In the test set, the fingerprint_One classification accuracy was 62% (78% sensitivity and 53% specificity); the classification by RUBTE using fingerprint_All resulted in 82% accuracy (70% sensitivity and 88% specificity). CONCLUSIONS: Lesion similarity analysis was developed, and it allowed to demonstrate that HL lesions were not homogeneous within patients in terms of radiomics signature. Therefore, a random target lesion selection should not be adopted for radiomics applications. Moreover, the classifier to predict R/R vs non-R/R performed the best when all the lesions were used. Springer International Publishing 2020-06-01 /pmc/articles/PMC8218114/ /pubmed/34191173 http://dx.doi.org/10.1186/s41824-020-00078-8 Text en © The Author(s) 2020 https://creativecommons.org/licenses/by/4.0/Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . |
spellingShingle | Original Article Sollini, Martina Kirienko, Margarita Cavinato, Lara Ricci, Francesca Biroli, Matteo Ieva, Francesca Calderoni, Letizia Tabacchi, Elena Nanni, Cristina Zinzani, Pier Luigi Fanti, Stefano Guidetti, Anna Alessi, Alessandra Corradini, Paolo Seregni, Ettore Carlo-Stella, Carmelo Chiti, Arturo Methodological framework for radiomics applications in Hodgkin’s lymphoma |
title | Methodological framework for radiomics applications in Hodgkin’s lymphoma |
title_full | Methodological framework for radiomics applications in Hodgkin’s lymphoma |
title_fullStr | Methodological framework for radiomics applications in Hodgkin’s lymphoma |
title_full_unstemmed | Methodological framework for radiomics applications in Hodgkin’s lymphoma |
title_short | Methodological framework for radiomics applications in Hodgkin’s lymphoma |
title_sort | methodological framework for radiomics applications in hodgkin’s lymphoma |
topic | Original Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8218114/ https://www.ncbi.nlm.nih.gov/pubmed/34191173 http://dx.doi.org/10.1186/s41824-020-00078-8 |
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