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DrugComb update: a more comprehensive drug sensitivity data repository and analysis portal

Combinatorial therapies that target multiple pathways have shown great promises for treating complex diseases. DrugComb (https://drugcomb.org/) is a web-based portal for the deposition and analysis of drug combination screening datasets. Since its first release, DrugComb has received continuous upda...

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Autores principales: Zheng, Shuyu, Aldahdooh, Jehad, Shadbahr, Tolou, Wang, Yinyin, Aldahdooh, Dalal, Bao, Jie, Wang, Wenyu, Tang, Jing
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8218202/
https://www.ncbi.nlm.nih.gov/pubmed/34060634
http://dx.doi.org/10.1093/nar/gkab438
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author Zheng, Shuyu
Aldahdooh, Jehad
Shadbahr, Tolou
Wang, Yinyin
Aldahdooh, Dalal
Bao, Jie
Wang, Wenyu
Tang, Jing
author_facet Zheng, Shuyu
Aldahdooh, Jehad
Shadbahr, Tolou
Wang, Yinyin
Aldahdooh, Dalal
Bao, Jie
Wang, Wenyu
Tang, Jing
author_sort Zheng, Shuyu
collection PubMed
description Combinatorial therapies that target multiple pathways have shown great promises for treating complex diseases. DrugComb (https://drugcomb.org/) is a web-based portal for the deposition and analysis of drug combination screening datasets. Since its first release, DrugComb has received continuous updates on the coverage of data resources, as well as on the functionality of the web server to improve the analysis, visualization and interpretation of drug combination screens. Here, we report significant updates of DrugComb, including: (i) manual curation and harmonization of more comprehensive drug combination and monotherapy screening data, not only for cancers but also for other diseases such as malaria and COVID-19; (ii) enhanced algorithms for assessing the sensitivity and synergy of drug combinations; (iii) network modelling tools to visualize the mechanisms of action of drugs or drug combinations for a given cancer sample and (iv) state-of-the-art machine learning models to predict drug combination sensitivity and synergy. These improvements have been provided with more user-friendly graphical interface and faster database infrastructure, which make DrugComb the most comprehensive web-based resources for the study of drug sensitivities for multiple diseases.
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spelling pubmed-82182022021-06-22 DrugComb update: a more comprehensive drug sensitivity data repository and analysis portal Zheng, Shuyu Aldahdooh, Jehad Shadbahr, Tolou Wang, Yinyin Aldahdooh, Dalal Bao, Jie Wang, Wenyu Tang, Jing Nucleic Acids Res Web Server Issue Combinatorial therapies that target multiple pathways have shown great promises for treating complex diseases. DrugComb (https://drugcomb.org/) is a web-based portal for the deposition and analysis of drug combination screening datasets. Since its first release, DrugComb has received continuous updates on the coverage of data resources, as well as on the functionality of the web server to improve the analysis, visualization and interpretation of drug combination screens. Here, we report significant updates of DrugComb, including: (i) manual curation and harmonization of more comprehensive drug combination and monotherapy screening data, not only for cancers but also for other diseases such as malaria and COVID-19; (ii) enhanced algorithms for assessing the sensitivity and synergy of drug combinations; (iii) network modelling tools to visualize the mechanisms of action of drugs or drug combinations for a given cancer sample and (iv) state-of-the-art machine learning models to predict drug combination sensitivity and synergy. These improvements have been provided with more user-friendly graphical interface and faster database infrastructure, which make DrugComb the most comprehensive web-based resources for the study of drug sensitivities for multiple diseases. Oxford University Press 2021-06-01 /pmc/articles/PMC8218202/ /pubmed/34060634 http://dx.doi.org/10.1093/nar/gkab438 Text en © The Author(s) 2021. Published by Oxford University Press on behalf of Nucleic Acids Research. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Web Server Issue
Zheng, Shuyu
Aldahdooh, Jehad
Shadbahr, Tolou
Wang, Yinyin
Aldahdooh, Dalal
Bao, Jie
Wang, Wenyu
Tang, Jing
DrugComb update: a more comprehensive drug sensitivity data repository and analysis portal
title DrugComb update: a more comprehensive drug sensitivity data repository and analysis portal
title_full DrugComb update: a more comprehensive drug sensitivity data repository and analysis portal
title_fullStr DrugComb update: a more comprehensive drug sensitivity data repository and analysis portal
title_full_unstemmed DrugComb update: a more comprehensive drug sensitivity data repository and analysis portal
title_short DrugComb update: a more comprehensive drug sensitivity data repository and analysis portal
title_sort drugcomb update: a more comprehensive drug sensitivity data repository and analysis portal
topic Web Server Issue
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8218202/
https://www.ncbi.nlm.nih.gov/pubmed/34060634
http://dx.doi.org/10.1093/nar/gkab438
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