Cargando…
Disk compression of k-mer sets
K-mer based methods have become prevalent in many areas of bioinformatics. In applications such as database search, they often work with large multi-terabyte-sized datasets. Storing such large datasets is a detriment to tool developers, tool users, and reproducibility efforts. General purpose compre...
Autores principales: | Rahman, Amatur, Chikhi, Rayan, Medvedev, Paul |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
BioMed Central
2021
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8218509/ https://www.ncbi.nlm.nih.gov/pubmed/34154632 http://dx.doi.org/10.1186/s13015-021-00192-7 |
Ejemplares similares
-
The K-mer File Format: a standardized and compact disk representation of sets of k-mers
por: Dufresne, Yoann, et al.
Publicado: (2022) -
Data structures based on k-mers for querying large collections of sequencing data sets
por: Marchet, Camille, et al.
Publicado: (2021) -
Mapping-friendly sequence reductions: Going beyond homopolymer compression
por: Blassel, Luc, et al.
Publicado: (2022) -
k
mdiff, large-scale and user-friendly differential k-mer analyses
por: Lemane, Téo, et al.
Publicado: (2022) -
aKmerBroom: Ancient oral DNA decontamination using Bloom filters on k-mer sets
por: Duitama González, Camila, et al.
Publicado: (2023)