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Which methods are the most effective in enabling novice users to participate in ontology creation? A usability study

Producing findable, accessible, interoperable and reusable (FAIR) data cannot be accomplished solely by data curators in all disciplines. In biology, we have shown that phenotypic data curation is not only costly, but it is burdened with inter-curator variation. We intend to propose a software platf...

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Autores principales: Zhang, Limin, Yang, Xingyi, Cota, Zuleima, Cui, Hong, Ford, Bruce, Chen, Hsin-liang, Macklin, James A, Reznicek, Anton, Starr, Julian
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8218699/
https://www.ncbi.nlm.nih.gov/pubmed/34156445
http://dx.doi.org/10.1093/database/baab035
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author Zhang, Limin
Yang, Xingyi
Cota, Zuleima
Cui, Hong
Ford, Bruce
Chen, Hsin-liang
Macklin, James A
Reznicek, Anton
Starr, Julian
author_facet Zhang, Limin
Yang, Xingyi
Cota, Zuleima
Cui, Hong
Ford, Bruce
Chen, Hsin-liang
Macklin, James A
Reznicek, Anton
Starr, Julian
author_sort Zhang, Limin
collection PubMed
description Producing findable, accessible, interoperable and reusable (FAIR) data cannot be accomplished solely by data curators in all disciplines. In biology, we have shown that phenotypic data curation is not only costly, but it is burdened with inter-curator variation. We intend to propose a software platform that would enable all data producers, including authors of scientific publications, to produce ontologized data at the time of publication. Working toward this goal, we need to identify ontology construction methods that are preferred by end users. Here, we employ two usability studies to evaluate effectiveness, efficiency and user satisfaction with a set of four methods that allow an end user to add terms and their relations to an ontology. Thirty-three participants took part in a controlled experiment where they evaluated the four methods (Quick Form, Wizard, WebProtégé and Wikidata) after watching demonstration videos and completing a hands-on task. Another think-aloud study was conducted with three professional botanists. The efficiency effectiveness and user confidence in the methods are clearly revealed through statistical and content analyses of participants’ comments. Quick Form, Wizard and WebProtégé offer distinct strengths that would benefit our author-driven FAIR data generation system. Features preferred by the participants will guide the design of future iterations.
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spelling pubmed-82186992021-06-23 Which methods are the most effective in enabling novice users to participate in ontology creation? A usability study Zhang, Limin Yang, Xingyi Cota, Zuleima Cui, Hong Ford, Bruce Chen, Hsin-liang Macklin, James A Reznicek, Anton Starr, Julian Database (Oxford) Original Article Producing findable, accessible, interoperable and reusable (FAIR) data cannot be accomplished solely by data curators in all disciplines. In biology, we have shown that phenotypic data curation is not only costly, but it is burdened with inter-curator variation. We intend to propose a software platform that would enable all data producers, including authors of scientific publications, to produce ontologized data at the time of publication. Working toward this goal, we need to identify ontology construction methods that are preferred by end users. Here, we employ two usability studies to evaluate effectiveness, efficiency and user satisfaction with a set of four methods that allow an end user to add terms and their relations to an ontology. Thirty-three participants took part in a controlled experiment where they evaluated the four methods (Quick Form, Wizard, WebProtégé and Wikidata) after watching demonstration videos and completing a hands-on task. Another think-aloud study was conducted with three professional botanists. The efficiency effectiveness and user confidence in the methods are clearly revealed through statistical and content analyses of participants’ comments. Quick Form, Wizard and WebProtégé offer distinct strengths that would benefit our author-driven FAIR data generation system. Features preferred by the participants will guide the design of future iterations. Oxford University Press 2021-06-22 /pmc/articles/PMC8218699/ /pubmed/34156445 http://dx.doi.org/10.1093/database/baab035 Text en © The Author(s) 2021. Published by Oxford University Press. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Original Article
Zhang, Limin
Yang, Xingyi
Cota, Zuleima
Cui, Hong
Ford, Bruce
Chen, Hsin-liang
Macklin, James A
Reznicek, Anton
Starr, Julian
Which methods are the most effective in enabling novice users to participate in ontology creation? A usability study
title Which methods are the most effective in enabling novice users to participate in ontology creation? A usability study
title_full Which methods are the most effective in enabling novice users to participate in ontology creation? A usability study
title_fullStr Which methods are the most effective in enabling novice users to participate in ontology creation? A usability study
title_full_unstemmed Which methods are the most effective in enabling novice users to participate in ontology creation? A usability study
title_short Which methods are the most effective in enabling novice users to participate in ontology creation? A usability study
title_sort which methods are the most effective in enabling novice users to participate in ontology creation? a usability study
topic Original Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8218699/
https://www.ncbi.nlm.nih.gov/pubmed/34156445
http://dx.doi.org/10.1093/database/baab035
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