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The complete chloroplast genome sequence of Bambusa lapidea (Bambusodae)
Bambusa lapidea is primarily distributed in Guangdong, Guangxi, Sichuan, Yunnan, and Hong Kong in China, occurring on plains, lower hills, and wetlands on both sides of rivers and adjacent to villages. Therefore, we sequenced and reported the complete chloroplast genome of B. lapidea for the first t...
Autores principales: | , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Taylor & Francis
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8218836/ https://www.ncbi.nlm.nih.gov/pubmed/34212092 http://dx.doi.org/10.1080/23802359.2021.1939175 |
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author | Chen, Liguang Zhang, Yangyang Liu, Song Hu, Wenfeng Han, Yongzhen Ul Haq, Ahsan Zheng, Yushan |
author_facet | Chen, Liguang Zhang, Yangyang Liu, Song Hu, Wenfeng Han, Yongzhen Ul Haq, Ahsan Zheng, Yushan |
author_sort | Chen, Liguang |
collection | PubMed |
description | Bambusa lapidea is primarily distributed in Guangdong, Guangxi, Sichuan, Yunnan, and Hong Kong in China, occurring on plains, lower hills, and wetlands on both sides of rivers and adjacent to villages. Therefore, we sequenced and reported the complete chloroplast genome of B. lapidea for the first time. The complete chloroplast genome sequence of B. lapidea was generated by de novo assembly using whole-genome next generation sequencing. The genome was 139,525 bp in total length, including a large next-copy (LSC) region of 83,034 bp, a small single-copy (SSC) region of 12,893 bp, a pair of invert repeats (IR) regions of 21,799 bp. The plastid genome contained 127 genes including 83 protein-coding genes, 36 tRNA genes, and eight rRNA genes. Phylogenetic analysis based on 14 chloroplast genomes indicates that B. lapidea is closely related to B. arnhemica sinospinosa and B. teres in Bambusodae. |
format | Online Article Text |
id | pubmed-8218836 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | Taylor & Francis |
record_format | MEDLINE/PubMed |
spelling | pubmed-82188362021-06-30 The complete chloroplast genome sequence of Bambusa lapidea (Bambusodae) Chen, Liguang Zhang, Yangyang Liu, Song Hu, Wenfeng Han, Yongzhen Ul Haq, Ahsan Zheng, Yushan Mitochondrial DNA B Resour Mitogenome Announcement Bambusa lapidea is primarily distributed in Guangdong, Guangxi, Sichuan, Yunnan, and Hong Kong in China, occurring on plains, lower hills, and wetlands on both sides of rivers and adjacent to villages. Therefore, we sequenced and reported the complete chloroplast genome of B. lapidea for the first time. The complete chloroplast genome sequence of B. lapidea was generated by de novo assembly using whole-genome next generation sequencing. The genome was 139,525 bp in total length, including a large next-copy (LSC) region of 83,034 bp, a small single-copy (SSC) region of 12,893 bp, a pair of invert repeats (IR) regions of 21,799 bp. The plastid genome contained 127 genes including 83 protein-coding genes, 36 tRNA genes, and eight rRNA genes. Phylogenetic analysis based on 14 chloroplast genomes indicates that B. lapidea is closely related to B. arnhemica sinospinosa and B. teres in Bambusodae. Taylor & Francis 2021-06-21 /pmc/articles/PMC8218836/ /pubmed/34212092 http://dx.doi.org/10.1080/23802359.2021.1939175 Text en © 2021 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Mitogenome Announcement Chen, Liguang Zhang, Yangyang Liu, Song Hu, Wenfeng Han, Yongzhen Ul Haq, Ahsan Zheng, Yushan The complete chloroplast genome sequence of Bambusa lapidea (Bambusodae) |
title | The complete chloroplast genome sequence of Bambusa lapidea (Bambusodae) |
title_full | The complete chloroplast genome sequence of Bambusa lapidea (Bambusodae) |
title_fullStr | The complete chloroplast genome sequence of Bambusa lapidea (Bambusodae) |
title_full_unstemmed | The complete chloroplast genome sequence of Bambusa lapidea (Bambusodae) |
title_short | The complete chloroplast genome sequence of Bambusa lapidea (Bambusodae) |
title_sort | complete chloroplast genome sequence of bambusa lapidea (bambusodae) |
topic | Mitogenome Announcement |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8218836/ https://www.ncbi.nlm.nih.gov/pubmed/34212092 http://dx.doi.org/10.1080/23802359.2021.1939175 |
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