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The complete chloroplast genome of Atractylodes koreana (Nakai) Kitam and its phylogenetic analysis
Atractylodes koreana (Nakai) Kitam is a perennial herb of Asteraceae, mainly distributed in China and Korea, which is the main adulterant of traditional herbal medicine ‘Cangzhu’. In the present study, we reported the complete chloroplast (cp) genome of A. koreana with the total length of 153,232 bp...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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Taylor & Francis
2021
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Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8218844/ https://www.ncbi.nlm.nih.gov/pubmed/34212090 http://dx.doi.org/10.1080/23802359.2021.1928561 |
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author | Xie, Hongbo Shi, Mengmeng Shi, Linchun Liu, Jinxin Zhao, Chunying |
author_facet | Xie, Hongbo Shi, Mengmeng Shi, Linchun Liu, Jinxin Zhao, Chunying |
author_sort | Xie, Hongbo |
collection | PubMed |
description | Atractylodes koreana (Nakai) Kitam is a perennial herb of Asteraceae, mainly distributed in China and Korea, which is the main adulterant of traditional herbal medicine ‘Cangzhu’. In the present study, we reported the complete chloroplast (cp) genome of A. koreana with the total length of 153,232 bp, which is consisted of four regions, including one large single copy (LSC) region of 84,250 bp, one small single copy (SSC) region of 18,690 bp, and two inverted repeat regions (IRa and IRb) of 25,146 bp. The GC content of the complete cp genome is 37.7%. A total of 110 unique genes were annotated, comprising 79 protein-coding genes, 27 transfer RNA (tRNA) genes and four ribosome RNA (rRNA) genes. Moreover, nine protein-coding genes contained one intron and three protein-coding genes (clpP, ycf3, and rps12) contained two introns. The phylogenetic analysis indicated that A. koreana is a sister group of A. chinensis and A. lancea. |
format | Online Article Text |
id | pubmed-8218844 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | Taylor & Francis |
record_format | MEDLINE/PubMed |
spelling | pubmed-82188442021-06-30 The complete chloroplast genome of Atractylodes koreana (Nakai) Kitam and its phylogenetic analysis Xie, Hongbo Shi, Mengmeng Shi, Linchun Liu, Jinxin Zhao, Chunying Mitochondrial DNA B Resour Mitogenome Announcement Atractylodes koreana (Nakai) Kitam is a perennial herb of Asteraceae, mainly distributed in China and Korea, which is the main adulterant of traditional herbal medicine ‘Cangzhu’. In the present study, we reported the complete chloroplast (cp) genome of A. koreana with the total length of 153,232 bp, which is consisted of four regions, including one large single copy (LSC) region of 84,250 bp, one small single copy (SSC) region of 18,690 bp, and two inverted repeat regions (IRa and IRb) of 25,146 bp. The GC content of the complete cp genome is 37.7%. A total of 110 unique genes were annotated, comprising 79 protein-coding genes, 27 transfer RNA (tRNA) genes and four ribosome RNA (rRNA) genes. Moreover, nine protein-coding genes contained one intron and three protein-coding genes (clpP, ycf3, and rps12) contained two introns. The phylogenetic analysis indicated that A. koreana is a sister group of A. chinensis and A. lancea. Taylor & Francis 2021-06-21 /pmc/articles/PMC8218844/ /pubmed/34212090 http://dx.doi.org/10.1080/23802359.2021.1928561 Text en © 2021 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Mitogenome Announcement Xie, Hongbo Shi, Mengmeng Shi, Linchun Liu, Jinxin Zhao, Chunying The complete chloroplast genome of Atractylodes koreana (Nakai) Kitam and its phylogenetic analysis |
title | The complete chloroplast genome of Atractylodes koreana (Nakai) Kitam and its phylogenetic analysis |
title_full | The complete chloroplast genome of Atractylodes koreana (Nakai) Kitam and its phylogenetic analysis |
title_fullStr | The complete chloroplast genome of Atractylodes koreana (Nakai) Kitam and its phylogenetic analysis |
title_full_unstemmed | The complete chloroplast genome of Atractylodes koreana (Nakai) Kitam and its phylogenetic analysis |
title_short | The complete chloroplast genome of Atractylodes koreana (Nakai) Kitam and its phylogenetic analysis |
title_sort | complete chloroplast genome of atractylodes koreana (nakai) kitam and its phylogenetic analysis |
topic | Mitogenome Announcement |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8218844/ https://www.ncbi.nlm.nih.gov/pubmed/34212090 http://dx.doi.org/10.1080/23802359.2021.1928561 |
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