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The complete chloroplast genome of Lithocarpus hancei (Benth.) Rehd (Fagaceae) from Zhejiang, China
Lithocarpus hancei (Benth.) Rehd is a widely distributed evergreen tree with broad-leaves that dominates the lower stories of the forest in China. Here, we sequenced and assembled the complete chloroplast genome of L. hancei. The genome is 161,304 bp with one large single copy (LSC: 90,585 bp), one...
Autores principales: | , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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Taylor & Francis
2021
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Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8218859/ https://www.ncbi.nlm.nih.gov/pubmed/34212084 http://dx.doi.org/10.1080/23802359.2021.1935357 |
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author | Ma, Chen-Xin Yan, Hai-Fei Ge, Xue-Jun |
author_facet | Ma, Chen-Xin Yan, Hai-Fei Ge, Xue-Jun |
author_sort | Ma, Chen-Xin |
collection | PubMed |
description | Lithocarpus hancei (Benth.) Rehd is a widely distributed evergreen tree with broad-leaves that dominates the lower stories of the forest in China. Here, we sequenced and assembled the complete chloroplast genome of L. hancei. The genome is 161,304 bp with one large single copy (LSC: 90,585 bp), one small single copy (SSC: 18,959 bp), and two inverted repeat (IR) regions (IRa and IRb, each 25,880 bp). It contains 117 genes, including 80 protein-coding genes, 33 tRNA genes, and four rRNA genes. Phylogenetic analysis of 21 representative cp genomes of the Fagaceae suggests Lithocarpus is monophyletic with strong bootstrap support and also that L. hancei is closely related to L. polystachyus. The cp genome is important for constructing a robust phylogeny of Lithocarpus and Fagaceae for future study. |
format | Online Article Text |
id | pubmed-8218859 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | Taylor & Francis |
record_format | MEDLINE/PubMed |
spelling | pubmed-82188592021-06-30 The complete chloroplast genome of Lithocarpus hancei (Benth.) Rehd (Fagaceae) from Zhejiang, China Ma, Chen-Xin Yan, Hai-Fei Ge, Xue-Jun Mitochondrial DNA B Resour Mitogenome Announcement Lithocarpus hancei (Benth.) Rehd is a widely distributed evergreen tree with broad-leaves that dominates the lower stories of the forest in China. Here, we sequenced and assembled the complete chloroplast genome of L. hancei. The genome is 161,304 bp with one large single copy (LSC: 90,585 bp), one small single copy (SSC: 18,959 bp), and two inverted repeat (IR) regions (IRa and IRb, each 25,880 bp). It contains 117 genes, including 80 protein-coding genes, 33 tRNA genes, and four rRNA genes. Phylogenetic analysis of 21 representative cp genomes of the Fagaceae suggests Lithocarpus is monophyletic with strong bootstrap support and also that L. hancei is closely related to L. polystachyus. The cp genome is important for constructing a robust phylogeny of Lithocarpus and Fagaceae for future study. Taylor & Francis 2021-06-21 /pmc/articles/PMC8218859/ /pubmed/34212084 http://dx.doi.org/10.1080/23802359.2021.1935357 Text en © 2021 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Mitogenome Announcement Ma, Chen-Xin Yan, Hai-Fei Ge, Xue-Jun The complete chloroplast genome of Lithocarpus hancei (Benth.) Rehd (Fagaceae) from Zhejiang, China |
title | The complete chloroplast genome of Lithocarpus hancei (Benth.) Rehd (Fagaceae) from Zhejiang, China |
title_full | The complete chloroplast genome of Lithocarpus hancei (Benth.) Rehd (Fagaceae) from Zhejiang, China |
title_fullStr | The complete chloroplast genome of Lithocarpus hancei (Benth.) Rehd (Fagaceae) from Zhejiang, China |
title_full_unstemmed | The complete chloroplast genome of Lithocarpus hancei (Benth.) Rehd (Fagaceae) from Zhejiang, China |
title_short | The complete chloroplast genome of Lithocarpus hancei (Benth.) Rehd (Fagaceae) from Zhejiang, China |
title_sort | complete chloroplast genome of lithocarpus hancei (benth.) rehd (fagaceae) from zhejiang, china |
topic | Mitogenome Announcement |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8218859/ https://www.ncbi.nlm.nih.gov/pubmed/34212084 http://dx.doi.org/10.1080/23802359.2021.1935357 |
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