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Metrics to relate COVID-19 wastewater data to clinical testing dynamics

Wastewater surveillance has emerged as a useful tool in the public health response to the COVID-19 pandemic. While wastewater surveillance has been applied at various scales to monitor population-level COVID-19 dynamics, there is a need for quantitative metrics to interpret wastewater data in the co...

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Autores principales: Xiao, Amy, Wu, Fuqing, Bushman, Mary, Zhang, Jianbo, Imakaev, Maxim, Chai, Peter R, Duvallet, Claire, Endo, Noriko, Erickson, Timothy B, Armas, Federica, Arnold, Brian, Chen, Hongjie, Chandra, Franciscus, Ghaeli, Newsha, Gu, Xiaoqiong, Hanage, William P, Lee, Wei Lin, Matus, Mariana, McElroy, Kyle A, Moniz, Katya, Rhode, Steven F, Thompson, Janelle, Alm, Eric J
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Cold Spring Harbor Laboratory 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8219106/
https://www.ncbi.nlm.nih.gov/pubmed/34159339
http://dx.doi.org/10.1101/2021.06.10.21258580
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author Xiao, Amy
Wu, Fuqing
Bushman, Mary
Zhang, Jianbo
Imakaev, Maxim
Chai, Peter R
Duvallet, Claire
Endo, Noriko
Erickson, Timothy B
Armas, Federica
Arnold, Brian
Chen, Hongjie
Chandra, Franciscus
Ghaeli, Newsha
Gu, Xiaoqiong
Hanage, William P
Lee, Wei Lin
Matus, Mariana
McElroy, Kyle A
Moniz, Katya
Rhode, Steven F
Thompson, Janelle
Alm, Eric J
author_facet Xiao, Amy
Wu, Fuqing
Bushman, Mary
Zhang, Jianbo
Imakaev, Maxim
Chai, Peter R
Duvallet, Claire
Endo, Noriko
Erickson, Timothy B
Armas, Federica
Arnold, Brian
Chen, Hongjie
Chandra, Franciscus
Ghaeli, Newsha
Gu, Xiaoqiong
Hanage, William P
Lee, Wei Lin
Matus, Mariana
McElroy, Kyle A
Moniz, Katya
Rhode, Steven F
Thompson, Janelle
Alm, Eric J
author_sort Xiao, Amy
collection PubMed
description Wastewater surveillance has emerged as a useful tool in the public health response to the COVID-19 pandemic. While wastewater surveillance has been applied at various scales to monitor population-level COVID-19 dynamics, there is a need for quantitative metrics to interpret wastewater data in the context of public health trends. We collected 24-hour composite wastewater samples from March 2020 through May 2021 from a Massachusetts wastewater treatment plant and measured SARS-CoV-2 RNA concentrations using RT-qPCR. We show that the relationship between wastewater viral titers and COVID-19 clinical cases and deaths varies over time. We demonstrate the utility of three new metrics to monitor changes in COVID-19 epidemiology: (1) the ratio between wastewater viral titers and clinical cases (WC ratio), (2) the time lag between wastewater and clinical reporting, and (3) a transfer function between the wastewater and clinical case curves. We find that the WC ratio increases after key events, providing insight into the balance between disease spread and public health response. We also find that wastewater data preceded clinically reported cases in the first wave of the pandemic but did not serve as a leading indicator in the second wave, likely due to increased testing capacity. These three metrics could complement a framework for integrating wastewater surveillance into the public health response to the COVID-19 pandemic and future pandemics.
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spelling pubmed-82191062021-06-23 Metrics to relate COVID-19 wastewater data to clinical testing dynamics Xiao, Amy Wu, Fuqing Bushman, Mary Zhang, Jianbo Imakaev, Maxim Chai, Peter R Duvallet, Claire Endo, Noriko Erickson, Timothy B Armas, Federica Arnold, Brian Chen, Hongjie Chandra, Franciscus Ghaeli, Newsha Gu, Xiaoqiong Hanage, William P Lee, Wei Lin Matus, Mariana McElroy, Kyle A Moniz, Katya Rhode, Steven F Thompson, Janelle Alm, Eric J medRxiv Article Wastewater surveillance has emerged as a useful tool in the public health response to the COVID-19 pandemic. While wastewater surveillance has been applied at various scales to monitor population-level COVID-19 dynamics, there is a need for quantitative metrics to interpret wastewater data in the context of public health trends. We collected 24-hour composite wastewater samples from March 2020 through May 2021 from a Massachusetts wastewater treatment plant and measured SARS-CoV-2 RNA concentrations using RT-qPCR. We show that the relationship between wastewater viral titers and COVID-19 clinical cases and deaths varies over time. We demonstrate the utility of three new metrics to monitor changes in COVID-19 epidemiology: (1) the ratio between wastewater viral titers and clinical cases (WC ratio), (2) the time lag between wastewater and clinical reporting, and (3) a transfer function between the wastewater and clinical case curves. We find that the WC ratio increases after key events, providing insight into the balance between disease spread and public health response. We also find that wastewater data preceded clinically reported cases in the first wave of the pandemic but did not serve as a leading indicator in the second wave, likely due to increased testing capacity. These three metrics could complement a framework for integrating wastewater surveillance into the public health response to the COVID-19 pandemic and future pandemics. Cold Spring Harbor Laboratory 2021-06-16 /pmc/articles/PMC8219106/ /pubmed/34159339 http://dx.doi.org/10.1101/2021.06.10.21258580 Text en https://creativecommons.org/licenses/by-nc-nd/4.0/This work is licensed under a Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International License (https://creativecommons.org/licenses/by-nc-nd/4.0/) , which allows reusers to copy and distribute the material in any medium or format in unadapted form only, for noncommercial purposes only, and only so long as attribution is given to the creator.
spellingShingle Article
Xiao, Amy
Wu, Fuqing
Bushman, Mary
Zhang, Jianbo
Imakaev, Maxim
Chai, Peter R
Duvallet, Claire
Endo, Noriko
Erickson, Timothy B
Armas, Federica
Arnold, Brian
Chen, Hongjie
Chandra, Franciscus
Ghaeli, Newsha
Gu, Xiaoqiong
Hanage, William P
Lee, Wei Lin
Matus, Mariana
McElroy, Kyle A
Moniz, Katya
Rhode, Steven F
Thompson, Janelle
Alm, Eric J
Metrics to relate COVID-19 wastewater data to clinical testing dynamics
title Metrics to relate COVID-19 wastewater data to clinical testing dynamics
title_full Metrics to relate COVID-19 wastewater data to clinical testing dynamics
title_fullStr Metrics to relate COVID-19 wastewater data to clinical testing dynamics
title_full_unstemmed Metrics to relate COVID-19 wastewater data to clinical testing dynamics
title_short Metrics to relate COVID-19 wastewater data to clinical testing dynamics
title_sort metrics to relate covid-19 wastewater data to clinical testing dynamics
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8219106/
https://www.ncbi.nlm.nih.gov/pubmed/34159339
http://dx.doi.org/10.1101/2021.06.10.21258580
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