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The brain transcriptome of the wolf spider, Schizocosa ocreata
OBJECTIVES: Arachnids have fascinating and unique biology, particularly for questions on sex differences and behavior, creating the potential for development of powerful emerging models in this group. Recent advances in genomic techniques have paved the way for a significant increase in the breadth...
Autores principales: | , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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BioMed Central
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8220750/ https://www.ncbi.nlm.nih.gov/pubmed/34162407 http://dx.doi.org/10.1186/s13104-021-05648-y |
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author | Stribling, Daniel Chang, Peter L. Dalton, Justin E. Conow, Christopher A. Rosenthal, Malcolm Hebets, Eileen Graze, Rita M. Arbeitman, Michelle N. |
author_facet | Stribling, Daniel Chang, Peter L. Dalton, Justin E. Conow, Christopher A. Rosenthal, Malcolm Hebets, Eileen Graze, Rita M. Arbeitman, Michelle N. |
author_sort | Stribling, Daniel |
collection | PubMed |
description | OBJECTIVES: Arachnids have fascinating and unique biology, particularly for questions on sex differences and behavior, creating the potential for development of powerful emerging models in this group. Recent advances in genomic techniques have paved the way for a significant increase in the breadth of genomic studies in non-model organisms. One growing area of research is comparative transcriptomics. When phylogenetic relationships to model organisms are known, comparative genomic studies provide context for analysis of homologous genes and pathways. The goal of this study was to lay the groundwork for comparative transcriptomics of sex differences in the brain of wolf spiders, a non-model organism of the pyhlum Euarthropoda, by generating transcriptomes and analyzing gene expression. DATA DESCRIPTION: To examine sex-differential gene expression, short read transcript sequencing and de novo transcriptome assembly were performed. Messenger RNA was isolated from brain tissue of male and female subadult and mature wolf spiders (Schizocosa ocreata). The raw data consist of sequences for the two different life stages in each sex. Computational analyses on these data include de novo transcriptome assembly and differential expression analyses. Sample-specific and combined transcriptomes, gene annotations, and differential expression results are described in this data note and are available from publicly-available databases. |
format | Online Article Text |
id | pubmed-8220750 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | BioMed Central |
record_format | MEDLINE/PubMed |
spelling | pubmed-82207502021-06-24 The brain transcriptome of the wolf spider, Schizocosa ocreata Stribling, Daniel Chang, Peter L. Dalton, Justin E. Conow, Christopher A. Rosenthal, Malcolm Hebets, Eileen Graze, Rita M. Arbeitman, Michelle N. BMC Res Notes Data Note OBJECTIVES: Arachnids have fascinating and unique biology, particularly for questions on sex differences and behavior, creating the potential for development of powerful emerging models in this group. Recent advances in genomic techniques have paved the way for a significant increase in the breadth of genomic studies in non-model organisms. One growing area of research is comparative transcriptomics. When phylogenetic relationships to model organisms are known, comparative genomic studies provide context for analysis of homologous genes and pathways. The goal of this study was to lay the groundwork for comparative transcriptomics of sex differences in the brain of wolf spiders, a non-model organism of the pyhlum Euarthropoda, by generating transcriptomes and analyzing gene expression. DATA DESCRIPTION: To examine sex-differential gene expression, short read transcript sequencing and de novo transcriptome assembly were performed. Messenger RNA was isolated from brain tissue of male and female subadult and mature wolf spiders (Schizocosa ocreata). The raw data consist of sequences for the two different life stages in each sex. Computational analyses on these data include de novo transcriptome assembly and differential expression analyses. Sample-specific and combined transcriptomes, gene annotations, and differential expression results are described in this data note and are available from publicly-available databases. BioMed Central 2021-06-23 /pmc/articles/PMC8220750/ /pubmed/34162407 http://dx.doi.org/10.1186/s13104-021-05648-y Text en © The Author(s) 2021 https://creativecommons.org/licenses/by/4.0/Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/ (https://creativecommons.org/publicdomain/zero/1.0/) ) applies to the data made available in this article, unless otherwise stated in a credit line to the data. |
spellingShingle | Data Note Stribling, Daniel Chang, Peter L. Dalton, Justin E. Conow, Christopher A. Rosenthal, Malcolm Hebets, Eileen Graze, Rita M. Arbeitman, Michelle N. The brain transcriptome of the wolf spider, Schizocosa ocreata |
title | The brain transcriptome of the wolf spider, Schizocosa ocreata |
title_full | The brain transcriptome of the wolf spider, Schizocosa ocreata |
title_fullStr | The brain transcriptome of the wolf spider, Schizocosa ocreata |
title_full_unstemmed | The brain transcriptome of the wolf spider, Schizocosa ocreata |
title_short | The brain transcriptome of the wolf spider, Schizocosa ocreata |
title_sort | brain transcriptome of the wolf spider, schizocosa ocreata |
topic | Data Note |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8220750/ https://www.ncbi.nlm.nih.gov/pubmed/34162407 http://dx.doi.org/10.1186/s13104-021-05648-y |
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