The complete chloroplast genome of Alsophila latebrosa, a common and widespread tree fern (Cyatheaceae)

Alsophila latebrosa is a common and widespread tree fern of Cyatheaceae. Its complete chloroplast genome is first assembled and reported with 155,724 bp in length, including a large single copy (LSC) region of 85,800 bp, a small single copy (SSC) region of 21,620 bp, and a pair of inverted repeats (...

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Autores principales: Wang, Zhen, Wang, Ruonan, Lin, Limin, Liu, Ruisi, Ma, Sirui, Hong, Yongfeng, He, Ziqing, Su, Yingjuan, Wang, Ting
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2021
Materias:
Mitogenome Announcement
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8221145/
https://www.ncbi.nlm.nih.gov/pubmed/34212105
http://dx.doi.org/10.1080/23802359.2021.1942262
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author Wang, Zhen
Wang, Ruonan
Lin, Limin
Liu, Ruisi
Ma, Sirui
Hong, Yongfeng
He, Ziqing
Su, Yingjuan
Wang, Ting
author_facet Wang, Zhen
Wang, Ruonan
Lin, Limin
Liu, Ruisi
Ma, Sirui
Hong, Yongfeng
He, Ziqing
Su, Yingjuan
Wang, Ting
author_sort Wang, Zhen
collection PubMed
description Alsophila latebrosa is a common and widespread tree fern of Cyatheaceae. Its complete chloroplast genome is first assembled and reported with 155,724 bp in length, including a large single copy (LSC) region of 85,800 bp, a small single copy (SSC) region of 21,620 bp, and a pair of inverted repeats (IRs) of 24,152 bp. The genome has 133 genes, including 89 protein-coding genes, 33 tRNA genes, eight rRNA genes and three pseudogenes. Maximum likelihood approach was employed to construct the phylogenetic relationship among ten ferns including A. latebrosa. The result showed that A. latebrosa was most related to A. costularis as a sister group with 100% bootstrap support. The complete chloroplast genome sequences of A. latebrosa will provide valuable genomic information to further illuminate phylogenetic classification of Cyatheacea.
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spelling pubmed-82211452021-06-30 The complete chloroplast genome of Alsophila latebrosa, a common and widespread tree fern (Cyatheaceae) Wang, Zhen Wang, Ruonan Lin, Limin Liu, Ruisi Ma, Sirui Hong, Yongfeng He, Ziqing Su, Yingjuan Wang, Ting Mitochondrial DNA B Resour Mitogenome Announcement Alsophila latebrosa is a common and widespread tree fern of Cyatheaceae. Its complete chloroplast genome is first assembled and reported with 155,724 bp in length, including a large single copy (LSC) region of 85,800 bp, a small single copy (SSC) region of 21,620 bp, and a pair of inverted repeats (IRs) of 24,152 bp. The genome has 133 genes, including 89 protein-coding genes, 33 tRNA genes, eight rRNA genes and three pseudogenes. Maximum likelihood approach was employed to construct the phylogenetic relationship among ten ferns including A. latebrosa. The result showed that A. latebrosa was most related to A. costularis as a sister group with 100% bootstrap support. The complete chloroplast genome sequences of A. latebrosa will provide valuable genomic information to further illuminate phylogenetic classification of Cyatheacea. Taylor & Francis 2021-06-22 /pmc/articles/PMC8221145/ /pubmed/34212105 http://dx.doi.org/10.1080/23802359.2021.1942262 Text en © 2021 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Mitogenome Announcement
Wang, Zhen
Wang, Ruonan
Lin, Limin
Liu, Ruisi
Ma, Sirui
Hong, Yongfeng
He, Ziqing
Su, Yingjuan
Wang, Ting
The complete chloroplast genome of Alsophila latebrosa, a common and widespread tree fern (Cyatheaceae)
title The complete chloroplast genome of Alsophila latebrosa, a common and widespread tree fern (Cyatheaceae)
title_full The complete chloroplast genome of Alsophila latebrosa, a common and widespread tree fern (Cyatheaceae)
title_fullStr The complete chloroplast genome of Alsophila latebrosa, a common and widespread tree fern (Cyatheaceae)
title_full_unstemmed The complete chloroplast genome of Alsophila latebrosa, a common and widespread tree fern (Cyatheaceae)
title_short The complete chloroplast genome of Alsophila latebrosa, a common and widespread tree fern (Cyatheaceae)
title_sort complete chloroplast genome of alsophila latebrosa, a common and widespread tree fern (cyatheaceae)
topic Mitogenome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8221145/
https://www.ncbi.nlm.nih.gov/pubmed/34212105
http://dx.doi.org/10.1080/23802359.2021.1942262
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