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A novel computer-aided diagnostic system for accurate detection and grading of liver tumors

Liver cancer is a major cause of morbidity and mortality in the world. The primary goals of this manuscript are the identification of novel imaging markers (morphological, functional, and anatomical/textural), and development of a computer-aided diagnostic (CAD) system to accurately detect and grade...

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Autores principales: Alksas, Ahmed, Shehata, Mohamed, Saleh, Gehad A., Shaffie, Ahmed, Soliman, Ahmed, Ghazal, Mohammed, Khelifi, Adel, Khalifeh, Hadil Abu, Razek, Ahmed Abdel, Giridharan, Guruprasad A., El-Baz, Ayman
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8222341/
https://www.ncbi.nlm.nih.gov/pubmed/34162893
http://dx.doi.org/10.1038/s41598-021-91634-0
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author Alksas, Ahmed
Shehata, Mohamed
Saleh, Gehad A.
Shaffie, Ahmed
Soliman, Ahmed
Ghazal, Mohammed
Khelifi, Adel
Khalifeh, Hadil Abu
Razek, Ahmed Abdel
Giridharan, Guruprasad A.
El-Baz, Ayman
author_facet Alksas, Ahmed
Shehata, Mohamed
Saleh, Gehad A.
Shaffie, Ahmed
Soliman, Ahmed
Ghazal, Mohammed
Khelifi, Adel
Khalifeh, Hadil Abu
Razek, Ahmed Abdel
Giridharan, Guruprasad A.
El-Baz, Ayman
author_sort Alksas, Ahmed
collection PubMed
description Liver cancer is a major cause of morbidity and mortality in the world. The primary goals of this manuscript are the identification of novel imaging markers (morphological, functional, and anatomical/textural), and development of a computer-aided diagnostic (CAD) system to accurately detect and grade liver tumors non-invasively. A total of 95 patients with liver tumors (M = 65, F = 30, age range = 34–82 years) were enrolled in the study after consents were obtained. 38 patients had benign tumors (LR1 = 19 and LR2 = 19), 19 patients had intermediate tumors (LR3), and 38 patients had hepatocellular carcinoma (HCC) malignant tumors (LR4 = 19 and LR5 = 19). A multi-phase contrast-enhanced magnetic resonance imaging (CE-MRI) was collected to extract the imaging markers. A comprehensive CAD system was developed, which includes the following main steps: i) estimation of morphological markers using a new parametric spherical harmonic model, ii) estimation of textural markers using a novel rotation invariant gray-level co-occurrence matrix (GLCM) and gray-level run-length matrix (GLRLM) models, and iii) calculation of the functional markers by estimating the wash-in/wash-out slopes, which enable quantification of the enhancement characteristics across different CE-MR phases. These markers were subsequently processed using a two-stages random forest-based classifier to classify the liver tumor as benign, intermediate, or malignant and determine the corresponding grade (LR1, LR2, LR3, LR4, or LR5). The overall CAD system using all the identified imaging markers achieved a sensitivity of 91.8%±0.9%, specificity of 91.2%±1.9%, and F[Formula: see text] score of 0.91±0.01, using the leave-one-subject-out (LOSO) cross-validation approach. Importantly, the CAD system achieved overall accuracies of [Formula: see text] , 85%±2%, 78%±3%, 83%±4%, and 79%±3% in grading liver tumors into LR1, LR2, LR3, LR4, and LR5, respectively. In addition to LOSO, the developed CAD system was tested using randomly stratified 10-fold and 5-fold cross-validation approaches. Alternative classification algorithms, including support vector machine, naive Bayes classifier, k-nearest neighbors, and linear discriminant analysis all produced inferior results compared to the proposed two stage random forest classification model. These experiments demonstrate the feasibility of the proposed CAD system as a novel tool to objectively assess liver tumors based on the new comprehensive imaging markers. The identified imaging markers and CAD system can be used as a non-invasive diagnostic tool for early and accurate detection and grading of liver cancer.
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spelling pubmed-82223412021-06-24 A novel computer-aided diagnostic system for accurate detection and grading of liver tumors Alksas, Ahmed Shehata, Mohamed Saleh, Gehad A. Shaffie, Ahmed Soliman, Ahmed Ghazal, Mohammed Khelifi, Adel Khalifeh, Hadil Abu Razek, Ahmed Abdel Giridharan, Guruprasad A. El-Baz, Ayman Sci Rep Article Liver cancer is a major cause of morbidity and mortality in the world. The primary goals of this manuscript are the identification of novel imaging markers (morphological, functional, and anatomical/textural), and development of a computer-aided diagnostic (CAD) system to accurately detect and grade liver tumors non-invasively. A total of 95 patients with liver tumors (M = 65, F = 30, age range = 34–82 years) were enrolled in the study after consents were obtained. 38 patients had benign tumors (LR1 = 19 and LR2 = 19), 19 patients had intermediate tumors (LR3), and 38 patients had hepatocellular carcinoma (HCC) malignant tumors (LR4 = 19 and LR5 = 19). A multi-phase contrast-enhanced magnetic resonance imaging (CE-MRI) was collected to extract the imaging markers. A comprehensive CAD system was developed, which includes the following main steps: i) estimation of morphological markers using a new parametric spherical harmonic model, ii) estimation of textural markers using a novel rotation invariant gray-level co-occurrence matrix (GLCM) and gray-level run-length matrix (GLRLM) models, and iii) calculation of the functional markers by estimating the wash-in/wash-out slopes, which enable quantification of the enhancement characteristics across different CE-MR phases. These markers were subsequently processed using a two-stages random forest-based classifier to classify the liver tumor as benign, intermediate, or malignant and determine the corresponding grade (LR1, LR2, LR3, LR4, or LR5). The overall CAD system using all the identified imaging markers achieved a sensitivity of 91.8%±0.9%, specificity of 91.2%±1.9%, and F[Formula: see text] score of 0.91±0.01, using the leave-one-subject-out (LOSO) cross-validation approach. Importantly, the CAD system achieved overall accuracies of [Formula: see text] , 85%±2%, 78%±3%, 83%±4%, and 79%±3% in grading liver tumors into LR1, LR2, LR3, LR4, and LR5, respectively. In addition to LOSO, the developed CAD system was tested using randomly stratified 10-fold and 5-fold cross-validation approaches. Alternative classification algorithms, including support vector machine, naive Bayes classifier, k-nearest neighbors, and linear discriminant analysis all produced inferior results compared to the proposed two stage random forest classification model. These experiments demonstrate the feasibility of the proposed CAD system as a novel tool to objectively assess liver tumors based on the new comprehensive imaging markers. The identified imaging markers and CAD system can be used as a non-invasive diagnostic tool for early and accurate detection and grading of liver cancer. Nature Publishing Group UK 2021-06-23 /pmc/articles/PMC8222341/ /pubmed/34162893 http://dx.doi.org/10.1038/s41598-021-91634-0 Text en © The Author(s) 2021 https://creativecommons.org/licenses/by/4.0/Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Article
Alksas, Ahmed
Shehata, Mohamed
Saleh, Gehad A.
Shaffie, Ahmed
Soliman, Ahmed
Ghazal, Mohammed
Khelifi, Adel
Khalifeh, Hadil Abu
Razek, Ahmed Abdel
Giridharan, Guruprasad A.
El-Baz, Ayman
A novel computer-aided diagnostic system for accurate detection and grading of liver tumors
title A novel computer-aided diagnostic system for accurate detection and grading of liver tumors
title_full A novel computer-aided diagnostic system for accurate detection and grading of liver tumors
title_fullStr A novel computer-aided diagnostic system for accurate detection and grading of liver tumors
title_full_unstemmed A novel computer-aided diagnostic system for accurate detection and grading of liver tumors
title_short A novel computer-aided diagnostic system for accurate detection and grading of liver tumors
title_sort novel computer-aided diagnostic system for accurate detection and grading of liver tumors
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8222341/
https://www.ncbi.nlm.nih.gov/pubmed/34162893
http://dx.doi.org/10.1038/s41598-021-91634-0
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