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Investigating the ACE2 polymorphisms in COVID‐19 susceptibility: An in silico analysis
BACKGROUND: Novel coronavirus (SARS‐CoV‐2) became an epidemic disease and lead to a pneumonia outbreak first in December 2019 in Wuhan, China. The symptoms related to coronavirus disease‐19 (COVID‐19) were different ranging from mild to severe lung injury and multi‐organ failure symptoms, eventually...
Autores principales: | , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
John Wiley and Sons Inc.
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8222831/ https://www.ncbi.nlm.nih.gov/pubmed/33818000 http://dx.doi.org/10.1002/mgg3.1672 |
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author | Pouladi, Nasser Abdolahi, Sepehr |
author_facet | Pouladi, Nasser Abdolahi, Sepehr |
author_sort | Pouladi, Nasser |
collection | PubMed |
description | BACKGROUND: Novel coronavirus (SARS‐CoV‐2) became an epidemic disease and lead to a pneumonia outbreak first in December 2019 in Wuhan, China. The symptoms related to coronavirus disease‐19 (COVID‐19) were different ranging from mild to severe lung injury and multi‐organ failure symptoms, eventually leading to death, especially in older patients with other co‐morbidities. The receptor of this virus in the human cell is angiotensin‐converting enzyme 2 (ACE2). METHODS: In this paper, we aimed to perform an in silico analysis of the frequently studied variants of the ACE2 gene and determine the effects of the variants in mRNA secondary structure and binding affinity of cellular factors. Fourteen single‐nucleotide polymorphisms were selected based on previous studies and investigated. RESULTS: All of the variants were analyzed in the RNAsnp database and three revealed a significant p‐value. The spliceAid2 database prediction showed that 7 out of 14 SNPs caused an alteration in a way that only the wild or mutated form was able to bind to proteins. The latter database also reported that three SNPs produces a dual form in which different specific proteins can bind to the sequence in a specific form (either wild or mutated form). CONCLUSION: Altogether, these estimations revealed the potential of variants in manipulation of the final stable form of ACE2 that can lead to different COVID‐19 susceptibility. |
format | Online Article Text |
id | pubmed-8222831 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | John Wiley and Sons Inc. |
record_format | MEDLINE/PubMed |
spelling | pubmed-82228312021-06-29 Investigating the ACE2 polymorphisms in COVID‐19 susceptibility: An in silico analysis Pouladi, Nasser Abdolahi, Sepehr Mol Genet Genomic Med Original Articles BACKGROUND: Novel coronavirus (SARS‐CoV‐2) became an epidemic disease and lead to a pneumonia outbreak first in December 2019 in Wuhan, China. The symptoms related to coronavirus disease‐19 (COVID‐19) were different ranging from mild to severe lung injury and multi‐organ failure symptoms, eventually leading to death, especially in older patients with other co‐morbidities. The receptor of this virus in the human cell is angiotensin‐converting enzyme 2 (ACE2). METHODS: In this paper, we aimed to perform an in silico analysis of the frequently studied variants of the ACE2 gene and determine the effects of the variants in mRNA secondary structure and binding affinity of cellular factors. Fourteen single‐nucleotide polymorphisms were selected based on previous studies and investigated. RESULTS: All of the variants were analyzed in the RNAsnp database and three revealed a significant p‐value. The spliceAid2 database prediction showed that 7 out of 14 SNPs caused an alteration in a way that only the wild or mutated form was able to bind to proteins. The latter database also reported that three SNPs produces a dual form in which different specific proteins can bind to the sequence in a specific form (either wild or mutated form). CONCLUSION: Altogether, these estimations revealed the potential of variants in manipulation of the final stable form of ACE2 that can lead to different COVID‐19 susceptibility. John Wiley and Sons Inc. 2021-04-05 /pmc/articles/PMC8222831/ /pubmed/33818000 http://dx.doi.org/10.1002/mgg3.1672 Text en © 2021 The Authors. Molecular Genetics & Genomic Medicine published by Wiley Periodicals LLC https://creativecommons.org/licenses/by/4.0/This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Original Articles Pouladi, Nasser Abdolahi, Sepehr Investigating the ACE2 polymorphisms in COVID‐19 susceptibility: An in silico analysis |
title | Investigating the ACE2 polymorphisms in COVID‐19 susceptibility: An in silico analysis |
title_full | Investigating the ACE2 polymorphisms in COVID‐19 susceptibility: An in silico analysis |
title_fullStr | Investigating the ACE2 polymorphisms in COVID‐19 susceptibility: An in silico analysis |
title_full_unstemmed | Investigating the ACE2 polymorphisms in COVID‐19 susceptibility: An in silico analysis |
title_short | Investigating the ACE2 polymorphisms in COVID‐19 susceptibility: An in silico analysis |
title_sort | investigating the ace2 polymorphisms in covid‐19 susceptibility: an in silico analysis |
topic | Original Articles |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8222831/ https://www.ncbi.nlm.nih.gov/pubmed/33818000 http://dx.doi.org/10.1002/mgg3.1672 |
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