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RHIVDB: A Freely Accessible Database of HIV Amino Acid Sequences and Clinical Data of Infected Patients

Human immunodeficiency virus (HIV) infection remains one of the most severe problems for humanity, particularly due to the development of HIV resistance. To evaluate an association between viral sequence data and drug combinations and to estimate an effect of a particular drug combination on the tre...

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Autores principales: Tarasova, Olga, Rudik, Anastasia, Kireev, Dmitry, Poroikov, Vladimir
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8222909/
https://www.ncbi.nlm.nih.gov/pubmed/34178036
http://dx.doi.org/10.3389/fgene.2021.679029
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author Tarasova, Olga
Rudik, Anastasia
Kireev, Dmitry
Poroikov, Vladimir
author_facet Tarasova, Olga
Rudik, Anastasia
Kireev, Dmitry
Poroikov, Vladimir
author_sort Tarasova, Olga
collection PubMed
description Human immunodeficiency virus (HIV) infection remains one of the most severe problems for humanity, particularly due to the development of HIV resistance. To evaluate an association between viral sequence data and drug combinations and to estimate an effect of a particular drug combination on the treatment results, collection of the most representative drug combinations used to cure HIV and the biological data on amino acid sequences of HIV proteins is essential. We have created a new, freely available web database containing 1,651 amino acid sequences of HIV structural proteins [reverse transcriptase (RT), protease (PR), integrase (IN), and envelope protein (ENV)], treatment history information, and CD4+ cell count and viral load data available by the user’s query. Additionally, the biological data on new HIV sequences and treatment data can be stored in the database by any user followed by an expert’s verification. The database is available on the web at http://www.way2drug.com/rhivdb.
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spelling pubmed-82229092021-06-25 RHIVDB: A Freely Accessible Database of HIV Amino Acid Sequences and Clinical Data of Infected Patients Tarasova, Olga Rudik, Anastasia Kireev, Dmitry Poroikov, Vladimir Front Genet Genetics Human immunodeficiency virus (HIV) infection remains one of the most severe problems for humanity, particularly due to the development of HIV resistance. To evaluate an association between viral sequence data and drug combinations and to estimate an effect of a particular drug combination on the treatment results, collection of the most representative drug combinations used to cure HIV and the biological data on amino acid sequences of HIV proteins is essential. We have created a new, freely available web database containing 1,651 amino acid sequences of HIV structural proteins [reverse transcriptase (RT), protease (PR), integrase (IN), and envelope protein (ENV)], treatment history information, and CD4+ cell count and viral load data available by the user’s query. Additionally, the biological data on new HIV sequences and treatment data can be stored in the database by any user followed by an expert’s verification. The database is available on the web at http://www.way2drug.com/rhivdb. Frontiers Media S.A. 2021-06-10 /pmc/articles/PMC8222909/ /pubmed/34178036 http://dx.doi.org/10.3389/fgene.2021.679029 Text en Copyright © 2021 Tarasova, Rudik, Kireev and Poroikov. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Genetics
Tarasova, Olga
Rudik, Anastasia
Kireev, Dmitry
Poroikov, Vladimir
RHIVDB: A Freely Accessible Database of HIV Amino Acid Sequences and Clinical Data of Infected Patients
title RHIVDB: A Freely Accessible Database of HIV Amino Acid Sequences and Clinical Data of Infected Patients
title_full RHIVDB: A Freely Accessible Database of HIV Amino Acid Sequences and Clinical Data of Infected Patients
title_fullStr RHIVDB: A Freely Accessible Database of HIV Amino Acid Sequences and Clinical Data of Infected Patients
title_full_unstemmed RHIVDB: A Freely Accessible Database of HIV Amino Acid Sequences and Clinical Data of Infected Patients
title_short RHIVDB: A Freely Accessible Database of HIV Amino Acid Sequences and Clinical Data of Infected Patients
title_sort rhivdb: a freely accessible database of hiv amino acid sequences and clinical data of infected patients
topic Genetics
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8222909/
https://www.ncbi.nlm.nih.gov/pubmed/34178036
http://dx.doi.org/10.3389/fgene.2021.679029
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