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Deep Metric Learning for Cervical Image Classification

Cervical cancer is caused by the persistent infection of certain types of the Human Papillomavirus (HPV) and is a leading cause of female mortality particularly in low and middle-income countries (LMIC). Visual inspection of the cervix with acetic acid (VIA) is a commonly used technique in cervical...

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Autores principales: PAL, ANABIK, XUE, ZHIYUN, BEFANO, BRIAN, RODRIGUEZ, ANA CECILIA, LONG, L. RODNEY, SCHIFFMAN, MARK, ANTANI, SAMEER
Formato: Online Artículo Texto
Lenguaje:English
Publicado: 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8224396/
https://www.ncbi.nlm.nih.gov/pubmed/34178558
http://dx.doi.org/10.1109/access.2021.3069346
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author PAL, ANABIK
XUE, ZHIYUN
BEFANO, BRIAN
RODRIGUEZ, ANA CECILIA
LONG, L. RODNEY
SCHIFFMAN, MARK
ANTANI, SAMEER
author_facet PAL, ANABIK
XUE, ZHIYUN
BEFANO, BRIAN
RODRIGUEZ, ANA CECILIA
LONG, L. RODNEY
SCHIFFMAN, MARK
ANTANI, SAMEER
author_sort PAL, ANABIK
collection PubMed
description Cervical cancer is caused by the persistent infection of certain types of the Human Papillomavirus (HPV) and is a leading cause of female mortality particularly in low and middle-income countries (LMIC). Visual inspection of the cervix with acetic acid (VIA) is a commonly used technique in cervical screening. While this technique is inexpensive, clinical assessment is highly subjective, and relatively poor reproducibility has been reported. A deep learning-based algorithm for automatic visual evaluation (AVE) of aceto-whitened cervical images was shown to be effective in detecting confirmed precancer (i.e. direct precursor to invasive cervical cancer). The images were selected from a large longitudinal study conducted by the National Cancer Institute in the Guanacaste province of Costa Rica. The training of AVE used annotation for cervix boundary, and the data scarcity challenge was dealt with manually optimized data augmentation. In contrast, we present a novel approach for cervical precancer detection using a deep metric learning-based (DML) framework which does not incorporate any effort for cervix boundary marking. The DML is an advanced learning strategy that can deal with data scarcity and bias training due to class imbalance data in a better way. Three different widely-used state-of-the-art DML techniques are evaluated- (a) Contrastive loss minimization, (b) N-pair embedding loss minimization, and, (c) Batch-hard loss minimization. Three popular Deep Convolutional Neural Networks (ResNet-50, MobileNet, NasNet) are configured for training with DML to produce class-separated (i.e. linearly separable) image feature descriptors. Finally, a K-Nearest Neighbor (KNN) classifier is trained with the extracted deep features. Both the feature quality and classification performance are quantitatively evaluated on the same data set as used in AVE. It shows that, unlike AVE, without using any data augmentation, the best model produced from our research improves specificity in disease detection without compromising sensitivity. The present research thus paves the way for new research directions for the related field.
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spelling pubmed-82243962021-06-24 Deep Metric Learning for Cervical Image Classification PAL, ANABIK XUE, ZHIYUN BEFANO, BRIAN RODRIGUEZ, ANA CECILIA LONG, L. RODNEY SCHIFFMAN, MARK ANTANI, SAMEER IEEE Access Article Cervical cancer is caused by the persistent infection of certain types of the Human Papillomavirus (HPV) and is a leading cause of female mortality particularly in low and middle-income countries (LMIC). Visual inspection of the cervix with acetic acid (VIA) is a commonly used technique in cervical screening. While this technique is inexpensive, clinical assessment is highly subjective, and relatively poor reproducibility has been reported. A deep learning-based algorithm for automatic visual evaluation (AVE) of aceto-whitened cervical images was shown to be effective in detecting confirmed precancer (i.e. direct precursor to invasive cervical cancer). The images were selected from a large longitudinal study conducted by the National Cancer Institute in the Guanacaste province of Costa Rica. The training of AVE used annotation for cervix boundary, and the data scarcity challenge was dealt with manually optimized data augmentation. In contrast, we present a novel approach for cervical precancer detection using a deep metric learning-based (DML) framework which does not incorporate any effort for cervix boundary marking. The DML is an advanced learning strategy that can deal with data scarcity and bias training due to class imbalance data in a better way. Three different widely-used state-of-the-art DML techniques are evaluated- (a) Contrastive loss minimization, (b) N-pair embedding loss minimization, and, (c) Batch-hard loss minimization. Three popular Deep Convolutional Neural Networks (ResNet-50, MobileNet, NasNet) are configured for training with DML to produce class-separated (i.e. linearly separable) image feature descriptors. Finally, a K-Nearest Neighbor (KNN) classifier is trained with the extracted deep features. Both the feature quality and classification performance are quantitatively evaluated on the same data set as used in AVE. It shows that, unlike AVE, without using any data augmentation, the best model produced from our research improves specificity in disease detection without compromising sensitivity. The present research thus paves the way for new research directions for the related field. 2021-03-29 2021 /pmc/articles/PMC8224396/ /pubmed/34178558 http://dx.doi.org/10.1109/access.2021.3069346 Text en https://creativecommons.org/licenses/by-nc-nd/4.0/This work is licensed under a Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 License. For more information, see https://creativecommons.org/licenses/by-nc-nd/4.0/
spellingShingle Article
PAL, ANABIK
XUE, ZHIYUN
BEFANO, BRIAN
RODRIGUEZ, ANA CECILIA
LONG, L. RODNEY
SCHIFFMAN, MARK
ANTANI, SAMEER
Deep Metric Learning for Cervical Image Classification
title Deep Metric Learning for Cervical Image Classification
title_full Deep Metric Learning for Cervical Image Classification
title_fullStr Deep Metric Learning for Cervical Image Classification
title_full_unstemmed Deep Metric Learning for Cervical Image Classification
title_short Deep Metric Learning for Cervical Image Classification
title_sort deep metric learning for cervical image classification
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8224396/
https://www.ncbi.nlm.nih.gov/pubmed/34178558
http://dx.doi.org/10.1109/access.2021.3069346
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