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Detection of Anomalous Diffusion with Deep Residual Networks
Identification of the diffusion type of molecules in living cells is crucial to deduct their driving forces and hence to get insight into the characteristics of the cells. In this paper, deep residual networks have been used to classify the trajectories of molecules. We started from the well known R...
Autores principales: | , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
MDPI
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8224696/ https://www.ncbi.nlm.nih.gov/pubmed/34067344 http://dx.doi.org/10.3390/e23060649 |
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author | Gajowczyk, Miłosz Szwabiński, Janusz |
author_facet | Gajowczyk, Miłosz Szwabiński, Janusz |
author_sort | Gajowczyk, Miłosz |
collection | PubMed |
description | Identification of the diffusion type of molecules in living cells is crucial to deduct their driving forces and hence to get insight into the characteristics of the cells. In this paper, deep residual networks have been used to classify the trajectories of molecules. We started from the well known ResNet architecture, developed for image classification, and carried out a series of numerical experiments to adapt it to detection of diffusion modes. We managed to find a model that has a better accuracy than the initial network, but contains only a small fraction of its parameters. The reduced size significantly shortened the training time of the model. Moreover, the resulting network has less tendency to overfitting and generalizes better to unseen data. |
format | Online Article Text |
id | pubmed-8224696 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | MDPI |
record_format | MEDLINE/PubMed |
spelling | pubmed-82246962021-06-25 Detection of Anomalous Diffusion with Deep Residual Networks Gajowczyk, Miłosz Szwabiński, Janusz Entropy (Basel) Article Identification of the diffusion type of molecules in living cells is crucial to deduct their driving forces and hence to get insight into the characteristics of the cells. In this paper, deep residual networks have been used to classify the trajectories of molecules. We started from the well known ResNet architecture, developed for image classification, and carried out a series of numerical experiments to adapt it to detection of diffusion modes. We managed to find a model that has a better accuracy than the initial network, but contains only a small fraction of its parameters. The reduced size significantly shortened the training time of the model. Moreover, the resulting network has less tendency to overfitting and generalizes better to unseen data. MDPI 2021-05-22 /pmc/articles/PMC8224696/ /pubmed/34067344 http://dx.doi.org/10.3390/e23060649 Text en © 2021 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Article Gajowczyk, Miłosz Szwabiński, Janusz Detection of Anomalous Diffusion with Deep Residual Networks |
title | Detection of Anomalous Diffusion with Deep Residual Networks |
title_full | Detection of Anomalous Diffusion with Deep Residual Networks |
title_fullStr | Detection of Anomalous Diffusion with Deep Residual Networks |
title_full_unstemmed | Detection of Anomalous Diffusion with Deep Residual Networks |
title_short | Detection of Anomalous Diffusion with Deep Residual Networks |
title_sort | detection of anomalous diffusion with deep residual networks |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8224696/ https://www.ncbi.nlm.nih.gov/pubmed/34067344 http://dx.doi.org/10.3390/e23060649 |
work_keys_str_mv | AT gajowczykmiłosz detectionofanomalousdiffusionwithdeepresidualnetworks AT szwabinskijanusz detectionofanomalousdiffusionwithdeepresidualnetworks |