Cargando…

Detection of Anomalous Diffusion with Deep Residual Networks

Identification of the diffusion type of molecules in living cells is crucial to deduct their driving forces and hence to get insight into the characteristics of the cells. In this paper, deep residual networks have been used to classify the trajectories of molecules. We started from the well known R...

Descripción completa

Detalles Bibliográficos
Autores principales: Gajowczyk, Miłosz, Szwabiński, Janusz
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8224696/
https://www.ncbi.nlm.nih.gov/pubmed/34067344
http://dx.doi.org/10.3390/e23060649
_version_ 1783711942155698176
author Gajowczyk, Miłosz
Szwabiński, Janusz
author_facet Gajowczyk, Miłosz
Szwabiński, Janusz
author_sort Gajowczyk, Miłosz
collection PubMed
description Identification of the diffusion type of molecules in living cells is crucial to deduct their driving forces and hence to get insight into the characteristics of the cells. In this paper, deep residual networks have been used to classify the trajectories of molecules. We started from the well known ResNet architecture, developed for image classification, and carried out a series of numerical experiments to adapt it to detection of diffusion modes. We managed to find a model that has a better accuracy than the initial network, but contains only a small fraction of its parameters. The reduced size significantly shortened the training time of the model. Moreover, the resulting network has less tendency to overfitting and generalizes better to unseen data.
format Online
Article
Text
id pubmed-8224696
institution National Center for Biotechnology Information
language English
publishDate 2021
publisher MDPI
record_format MEDLINE/PubMed
spelling pubmed-82246962021-06-25 Detection of Anomalous Diffusion with Deep Residual Networks Gajowczyk, Miłosz Szwabiński, Janusz Entropy (Basel) Article Identification of the diffusion type of molecules in living cells is crucial to deduct their driving forces and hence to get insight into the characteristics of the cells. In this paper, deep residual networks have been used to classify the trajectories of molecules. We started from the well known ResNet architecture, developed for image classification, and carried out a series of numerical experiments to adapt it to detection of diffusion modes. We managed to find a model that has a better accuracy than the initial network, but contains only a small fraction of its parameters. The reduced size significantly shortened the training time of the model. Moreover, the resulting network has less tendency to overfitting and generalizes better to unseen data. MDPI 2021-05-22 /pmc/articles/PMC8224696/ /pubmed/34067344 http://dx.doi.org/10.3390/e23060649 Text en © 2021 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Gajowczyk, Miłosz
Szwabiński, Janusz
Detection of Anomalous Diffusion with Deep Residual Networks
title Detection of Anomalous Diffusion with Deep Residual Networks
title_full Detection of Anomalous Diffusion with Deep Residual Networks
title_fullStr Detection of Anomalous Diffusion with Deep Residual Networks
title_full_unstemmed Detection of Anomalous Diffusion with Deep Residual Networks
title_short Detection of Anomalous Diffusion with Deep Residual Networks
title_sort detection of anomalous diffusion with deep residual networks
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8224696/
https://www.ncbi.nlm.nih.gov/pubmed/34067344
http://dx.doi.org/10.3390/e23060649
work_keys_str_mv AT gajowczykmiłosz detectionofanomalousdiffusionwithdeepresidualnetworks
AT szwabinskijanusz detectionofanomalousdiffusionwithdeepresidualnetworks