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Chimeric vaccine designs against Acinetobacter baumannii using pan genome and reverse vaccinology approaches

Acinetobacter baumannii (A. baumannii), an opportunistic, gram-negative pathogen, has evoked the interest of the medical community throughout the world because of its ability to cause nosocomial infections, majorly infecting those in intensive care units. It has also drawn the attention of researche...

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Autores principales: Shahid, Fatima, Zaheer, Tahreem, Ashraf, Shifa Tariq, Shehroz, Muhammad, Anwer, Farha, Naz, Anam, Ali, Amjad
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8225639/
https://www.ncbi.nlm.nih.gov/pubmed/34168196
http://dx.doi.org/10.1038/s41598-021-92501-8
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author Shahid, Fatima
Zaheer, Tahreem
Ashraf, Shifa Tariq
Shehroz, Muhammad
Anwer, Farha
Naz, Anam
Ali, Amjad
author_facet Shahid, Fatima
Zaheer, Tahreem
Ashraf, Shifa Tariq
Shehroz, Muhammad
Anwer, Farha
Naz, Anam
Ali, Amjad
author_sort Shahid, Fatima
collection PubMed
description Acinetobacter baumannii (A. baumannii), an opportunistic, gram-negative pathogen, has evoked the interest of the medical community throughout the world because of its ability to cause nosocomial infections, majorly infecting those in intensive care units. It has also drawn the attention of researchers due to its evolving immune evasion strategies and increased drug resistance. The emergence of multi-drug-resistant-strains has urged the need to explore novel therapeutic options as an alternative to antibiotics. Due to the upsurge in antibiotic resistance mechanisms exhibited by A. baumannii, the current therapeutic strategies are rendered less effective. The aim of this study is to explore novel therapeutic alternatives against A. baumannii to control the ailed infection. In this study, a computational framework is employed involving, pan genomics, subtractive proteomics and reverse vaccinology strategies to identify core promiscuous vaccine candidates. Two chimeric vaccine constructs having B-cell derived T-cell epitopes from prioritized vaccine candidates; APN, AdeK and AdeI have been designed and checked for their possible interactions with host BCR, TLRs and HLA Class I and II Superfamily alleles. These vaccine candidates can be experimentally validated and thus contribute to vaccine development against A. baumannii infections.
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spelling pubmed-82256392021-07-02 Chimeric vaccine designs against Acinetobacter baumannii using pan genome and reverse vaccinology approaches Shahid, Fatima Zaheer, Tahreem Ashraf, Shifa Tariq Shehroz, Muhammad Anwer, Farha Naz, Anam Ali, Amjad Sci Rep Article Acinetobacter baumannii (A. baumannii), an opportunistic, gram-negative pathogen, has evoked the interest of the medical community throughout the world because of its ability to cause nosocomial infections, majorly infecting those in intensive care units. It has also drawn the attention of researchers due to its evolving immune evasion strategies and increased drug resistance. The emergence of multi-drug-resistant-strains has urged the need to explore novel therapeutic options as an alternative to antibiotics. Due to the upsurge in antibiotic resistance mechanisms exhibited by A. baumannii, the current therapeutic strategies are rendered less effective. The aim of this study is to explore novel therapeutic alternatives against A. baumannii to control the ailed infection. In this study, a computational framework is employed involving, pan genomics, subtractive proteomics and reverse vaccinology strategies to identify core promiscuous vaccine candidates. Two chimeric vaccine constructs having B-cell derived T-cell epitopes from prioritized vaccine candidates; APN, AdeK and AdeI have been designed and checked for their possible interactions with host BCR, TLRs and HLA Class I and II Superfamily alleles. These vaccine candidates can be experimentally validated and thus contribute to vaccine development against A. baumannii infections. Nature Publishing Group UK 2021-06-24 /pmc/articles/PMC8225639/ /pubmed/34168196 http://dx.doi.org/10.1038/s41598-021-92501-8 Text en © The Author(s) 2021 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Article
Shahid, Fatima
Zaheer, Tahreem
Ashraf, Shifa Tariq
Shehroz, Muhammad
Anwer, Farha
Naz, Anam
Ali, Amjad
Chimeric vaccine designs against Acinetobacter baumannii using pan genome and reverse vaccinology approaches
title Chimeric vaccine designs against Acinetobacter baumannii using pan genome and reverse vaccinology approaches
title_full Chimeric vaccine designs against Acinetobacter baumannii using pan genome and reverse vaccinology approaches
title_fullStr Chimeric vaccine designs against Acinetobacter baumannii using pan genome and reverse vaccinology approaches
title_full_unstemmed Chimeric vaccine designs against Acinetobacter baumannii using pan genome and reverse vaccinology approaches
title_short Chimeric vaccine designs against Acinetobacter baumannii using pan genome and reverse vaccinology approaches
title_sort chimeric vaccine designs against acinetobacter baumannii using pan genome and reverse vaccinology approaches
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8225639/
https://www.ncbi.nlm.nih.gov/pubmed/34168196
http://dx.doi.org/10.1038/s41598-021-92501-8
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