Cargando…

The complete genome sequence of Toxicodendron radicans, Eastern Poison Ivy

Eastern Poison Ivy ( Toxicodendron radicans, Anacardiaceae) is well known in Eastern North America for causing contact dermatitis, an itchy and painful rash in most people who come in contact with it.  We present the whole genome sequence and annotation of this species. A total of 96,255,779 paired-...

Descripción completa

Detalles Bibliográficos
Autores principales: Pirro, Toby, Pirro, Stacy
Formato: Online Artículo Texto
Lenguaje:English
Publicado: F1000 Research Limited 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8226398/
https://www.ncbi.nlm.nih.gov/pubmed/34249347
http://dx.doi.org/10.12688/f1000research.25556.1
_version_ 1783712279832821760
author Pirro, Toby
Pirro, Stacy
author_facet Pirro, Toby
Pirro, Stacy
author_sort Pirro, Toby
collection PubMed
description Eastern Poison Ivy ( Toxicodendron radicans, Anacardiaceae) is well known in Eastern North America for causing contact dermatitis, an itchy and painful rash in most people who come in contact with it.  We present the whole genome sequence and annotation of this species. A total of 96,255,779 paired-ends reads consisting of 28.9 G bases were obtained by sequencing one leaf from a wild-collected plant.  The reads were assembled by a de novo method followed by alignment to related species. Annotation was performed via GenMark-ES. The raw and assembled data is publicly available via GenBank: Sequence Read Archive ( SRR10325927) and Assembly ( GCA_009867345).
format Online
Article
Text
id pubmed-8226398
institution National Center for Biotechnology Information
language English
publishDate 2020
publisher F1000 Research Limited
record_format MEDLINE/PubMed
spelling pubmed-82263982021-07-08 The complete genome sequence of Toxicodendron radicans, Eastern Poison Ivy Pirro, Toby Pirro, Stacy F1000Res Data Note Eastern Poison Ivy ( Toxicodendron radicans, Anacardiaceae) is well known in Eastern North America for causing contact dermatitis, an itchy and painful rash in most people who come in contact with it.  We present the whole genome sequence and annotation of this species. A total of 96,255,779 paired-ends reads consisting of 28.9 G bases were obtained by sequencing one leaf from a wild-collected plant.  The reads were assembled by a de novo method followed by alignment to related species. Annotation was performed via GenMark-ES. The raw and assembled data is publicly available via GenBank: Sequence Read Archive ( SRR10325927) and Assembly ( GCA_009867345). F1000 Research Limited 2020-08-20 /pmc/articles/PMC8226398/ /pubmed/34249347 http://dx.doi.org/10.12688/f1000research.25556.1 Text en Copyright: © 2020 Pirro T and Pirro S https://creativecommons.org/licenses/by/4.0/This is an open access article distributed under the terms of the Creative Commons Attribution Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Data Note
Pirro, Toby
Pirro, Stacy
The complete genome sequence of Toxicodendron radicans, Eastern Poison Ivy
title The complete genome sequence of Toxicodendron radicans, Eastern Poison Ivy
title_full The complete genome sequence of Toxicodendron radicans, Eastern Poison Ivy
title_fullStr The complete genome sequence of Toxicodendron radicans, Eastern Poison Ivy
title_full_unstemmed The complete genome sequence of Toxicodendron radicans, Eastern Poison Ivy
title_short The complete genome sequence of Toxicodendron radicans, Eastern Poison Ivy
title_sort complete genome sequence of toxicodendron radicans, eastern poison ivy
topic Data Note
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8226398/
https://www.ncbi.nlm.nih.gov/pubmed/34249347
http://dx.doi.org/10.12688/f1000research.25556.1
work_keys_str_mv AT pirrotoby thecompletegenomesequenceoftoxicodendronradicanseasternpoisonivy
AT pirrostacy thecompletegenomesequenceoftoxicodendronradicanseasternpoisonivy
AT pirrotoby completegenomesequenceoftoxicodendronradicanseasternpoisonivy
AT pirrostacy completegenomesequenceoftoxicodendronradicanseasternpoisonivy