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The complete genome sequence of Toxicodendron radicans, Eastern Poison Ivy
Eastern Poison Ivy ( Toxicodendron radicans, Anacardiaceae) is well known in Eastern North America for causing contact dermatitis, an itchy and painful rash in most people who come in contact with it. We present the whole genome sequence and annotation of this species. A total of 96,255,779 paired-...
Autores principales: | , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
F1000 Research Limited
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8226398/ https://www.ncbi.nlm.nih.gov/pubmed/34249347 http://dx.doi.org/10.12688/f1000research.25556.1 |
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author | Pirro, Toby Pirro, Stacy |
author_facet | Pirro, Toby Pirro, Stacy |
author_sort | Pirro, Toby |
collection | PubMed |
description | Eastern Poison Ivy ( Toxicodendron radicans, Anacardiaceae) is well known in Eastern North America for causing contact dermatitis, an itchy and painful rash in most people who come in contact with it. We present the whole genome sequence and annotation of this species. A total of 96,255,779 paired-ends reads consisting of 28.9 G bases were obtained by sequencing one leaf from a wild-collected plant. The reads were assembled by a de novo method followed by alignment to related species. Annotation was performed via GenMark-ES. The raw and assembled data is publicly available via GenBank: Sequence Read Archive ( SRR10325927) and Assembly ( GCA_009867345). |
format | Online Article Text |
id | pubmed-8226398 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | F1000 Research Limited |
record_format | MEDLINE/PubMed |
spelling | pubmed-82263982021-07-08 The complete genome sequence of Toxicodendron radicans, Eastern Poison Ivy Pirro, Toby Pirro, Stacy F1000Res Data Note Eastern Poison Ivy ( Toxicodendron radicans, Anacardiaceae) is well known in Eastern North America for causing contact dermatitis, an itchy and painful rash in most people who come in contact with it. We present the whole genome sequence and annotation of this species. A total of 96,255,779 paired-ends reads consisting of 28.9 G bases were obtained by sequencing one leaf from a wild-collected plant. The reads were assembled by a de novo method followed by alignment to related species. Annotation was performed via GenMark-ES. The raw and assembled data is publicly available via GenBank: Sequence Read Archive ( SRR10325927) and Assembly ( GCA_009867345). F1000 Research Limited 2020-08-20 /pmc/articles/PMC8226398/ /pubmed/34249347 http://dx.doi.org/10.12688/f1000research.25556.1 Text en Copyright: © 2020 Pirro T and Pirro S https://creativecommons.org/licenses/by/4.0/This is an open access article distributed under the terms of the Creative Commons Attribution Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Data Note Pirro, Toby Pirro, Stacy The complete genome sequence of Toxicodendron radicans, Eastern Poison Ivy |
title | The complete genome sequence of
Toxicodendron radicans, Eastern Poison Ivy |
title_full | The complete genome sequence of
Toxicodendron radicans, Eastern Poison Ivy |
title_fullStr | The complete genome sequence of
Toxicodendron radicans, Eastern Poison Ivy |
title_full_unstemmed | The complete genome sequence of
Toxicodendron radicans, Eastern Poison Ivy |
title_short | The complete genome sequence of
Toxicodendron radicans, Eastern Poison Ivy |
title_sort | complete genome sequence of
toxicodendron radicans, eastern poison ivy |
topic | Data Note |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8226398/ https://www.ncbi.nlm.nih.gov/pubmed/34249347 http://dx.doi.org/10.12688/f1000research.25556.1 |
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