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Principled Decision-Making Workflow with Hierarchical Bayesian Models of High-Throughput Dose-Response Measurements
We present a case study applying hierarchical Bayesian estimation on high-throughput protein melting-point data measured across the tree of life. We show that the model is able to impute reasonable melting temperatures even in the face of unreasonably noisy data. Additionally, we demonstrate how to...
Autores principales: | , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
MDPI
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8227938/ https://www.ncbi.nlm.nih.gov/pubmed/34201203 http://dx.doi.org/10.3390/e23060727 |
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author | Ma, Eric J. Kummer, Arkadij |
author_facet | Ma, Eric J. Kummer, Arkadij |
author_sort | Ma, Eric J. |
collection | PubMed |
description | We present a case study applying hierarchical Bayesian estimation on high-throughput protein melting-point data measured across the tree of life. We show that the model is able to impute reasonable melting temperatures even in the face of unreasonably noisy data. Additionally, we demonstrate how to use the variance in melting-temperature posterior-distribution estimates to enable principled decision-making in common high-throughput measurement tasks, and contrast the decision-making workflow against simple maximum-likelihood curve-fitting. We conclude with a discussion of the relative merits of each workflow. |
format | Online Article Text |
id | pubmed-8227938 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | MDPI |
record_format | MEDLINE/PubMed |
spelling | pubmed-82279382021-06-26 Principled Decision-Making Workflow with Hierarchical Bayesian Models of High-Throughput Dose-Response Measurements Ma, Eric J. Kummer, Arkadij Entropy (Basel) Article We present a case study applying hierarchical Bayesian estimation on high-throughput protein melting-point data measured across the tree of life. We show that the model is able to impute reasonable melting temperatures even in the face of unreasonably noisy data. Additionally, we demonstrate how to use the variance in melting-temperature posterior-distribution estimates to enable principled decision-making in common high-throughput measurement tasks, and contrast the decision-making workflow against simple maximum-likelihood curve-fitting. We conclude with a discussion of the relative merits of each workflow. MDPI 2021-06-08 /pmc/articles/PMC8227938/ /pubmed/34201203 http://dx.doi.org/10.3390/e23060727 Text en © 2021 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Article Ma, Eric J. Kummer, Arkadij Principled Decision-Making Workflow with Hierarchical Bayesian Models of High-Throughput Dose-Response Measurements |
title | Principled Decision-Making Workflow with Hierarchical Bayesian Models of High-Throughput Dose-Response Measurements |
title_full | Principled Decision-Making Workflow with Hierarchical Bayesian Models of High-Throughput Dose-Response Measurements |
title_fullStr | Principled Decision-Making Workflow with Hierarchical Bayesian Models of High-Throughput Dose-Response Measurements |
title_full_unstemmed | Principled Decision-Making Workflow with Hierarchical Bayesian Models of High-Throughput Dose-Response Measurements |
title_short | Principled Decision-Making Workflow with Hierarchical Bayesian Models of High-Throughput Dose-Response Measurements |
title_sort | principled decision-making workflow with hierarchical bayesian models of high-throughput dose-response measurements |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8227938/ https://www.ncbi.nlm.nih.gov/pubmed/34201203 http://dx.doi.org/10.3390/e23060727 |
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