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Principled Decision-Making Workflow with Hierarchical Bayesian Models of High-Throughput Dose-Response Measurements

We present a case study applying hierarchical Bayesian estimation on high-throughput protein melting-point data measured across the tree of life. We show that the model is able to impute reasonable melting temperatures even in the face of unreasonably noisy data. Additionally, we demonstrate how to...

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Detalles Bibliográficos
Autores principales: Ma, Eric J., Kummer, Arkadij
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8227938/
https://www.ncbi.nlm.nih.gov/pubmed/34201203
http://dx.doi.org/10.3390/e23060727
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author Ma, Eric J.
Kummer, Arkadij
author_facet Ma, Eric J.
Kummer, Arkadij
author_sort Ma, Eric J.
collection PubMed
description We present a case study applying hierarchical Bayesian estimation on high-throughput protein melting-point data measured across the tree of life. We show that the model is able to impute reasonable melting temperatures even in the face of unreasonably noisy data. Additionally, we demonstrate how to use the variance in melting-temperature posterior-distribution estimates to enable principled decision-making in common high-throughput measurement tasks, and contrast the decision-making workflow against simple maximum-likelihood curve-fitting. We conclude with a discussion of the relative merits of each workflow.
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spelling pubmed-82279382021-06-26 Principled Decision-Making Workflow with Hierarchical Bayesian Models of High-Throughput Dose-Response Measurements Ma, Eric J. Kummer, Arkadij Entropy (Basel) Article We present a case study applying hierarchical Bayesian estimation on high-throughput protein melting-point data measured across the tree of life. We show that the model is able to impute reasonable melting temperatures even in the face of unreasonably noisy data. Additionally, we demonstrate how to use the variance in melting-temperature posterior-distribution estimates to enable principled decision-making in common high-throughput measurement tasks, and contrast the decision-making workflow against simple maximum-likelihood curve-fitting. We conclude with a discussion of the relative merits of each workflow. MDPI 2021-06-08 /pmc/articles/PMC8227938/ /pubmed/34201203 http://dx.doi.org/10.3390/e23060727 Text en © 2021 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Ma, Eric J.
Kummer, Arkadij
Principled Decision-Making Workflow with Hierarchical Bayesian Models of High-Throughput Dose-Response Measurements
title Principled Decision-Making Workflow with Hierarchical Bayesian Models of High-Throughput Dose-Response Measurements
title_full Principled Decision-Making Workflow with Hierarchical Bayesian Models of High-Throughput Dose-Response Measurements
title_fullStr Principled Decision-Making Workflow with Hierarchical Bayesian Models of High-Throughput Dose-Response Measurements
title_full_unstemmed Principled Decision-Making Workflow with Hierarchical Bayesian Models of High-Throughput Dose-Response Measurements
title_short Principled Decision-Making Workflow with Hierarchical Bayesian Models of High-Throughput Dose-Response Measurements
title_sort principled decision-making workflow with hierarchical bayesian models of high-throughput dose-response measurements
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8227938/
https://www.ncbi.nlm.nih.gov/pubmed/34201203
http://dx.doi.org/10.3390/e23060727
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