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Duplicate Detection of Spike Events: A Relevant Problem in Human Single-Unit Recordings
Single-unit recordings in the brain of behaving human subjects provide a unique opportunity to advance our understanding of neural mechanisms of cognition. These recordings are exclusively performed in medical centers during diagnostic or therapeutic procedures. The presence of medical instruments a...
Autores principales: | , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
MDPI
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8228483/ https://www.ncbi.nlm.nih.gov/pubmed/34201115 http://dx.doi.org/10.3390/brainsci11060761 |
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author | Dehnen, Gert Kehl, Marcel S. Darcher, Alana Müller, Tamara T. Macke, Jakob H. Borger, Valeri Surges, Rainer Mormann, Florian |
author_facet | Dehnen, Gert Kehl, Marcel S. Darcher, Alana Müller, Tamara T. Macke, Jakob H. Borger, Valeri Surges, Rainer Mormann, Florian |
author_sort | Dehnen, Gert |
collection | PubMed |
description | Single-unit recordings in the brain of behaving human subjects provide a unique opportunity to advance our understanding of neural mechanisms of cognition. These recordings are exclusively performed in medical centers during diagnostic or therapeutic procedures. The presence of medical instruments along with other aspects of the hospital environment limit the control of electrical noise compared to animal laboratory environments. Here, we highlight the problem of an increased occurrence of simultaneous spike events on different recording channels in human single-unit recordings. Most of these simultaneous events were detected in clusters previously labeled as artifacts and showed similar waveforms. These events may result from common external noise sources or from different micro-electrodes recording activity from the same neuron. To address the problem of duplicate recorded events, we introduce an open-source algorithm to identify these artificial spike events based on their synchronicity and waveform similarity. Applying our method to a comprehensive dataset of human single-unit recordings, we demonstrate that our algorithm can substantially increase the data quality of these recordings. Given our findings, we argue that future studies of single-unit activity recorded under noisy conditions should employ algorithms of this kind to improve data quality. |
format | Online Article Text |
id | pubmed-8228483 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | MDPI |
record_format | MEDLINE/PubMed |
spelling | pubmed-82284832021-06-26 Duplicate Detection of Spike Events: A Relevant Problem in Human Single-Unit Recordings Dehnen, Gert Kehl, Marcel S. Darcher, Alana Müller, Tamara T. Macke, Jakob H. Borger, Valeri Surges, Rainer Mormann, Florian Brain Sci Article Single-unit recordings in the brain of behaving human subjects provide a unique opportunity to advance our understanding of neural mechanisms of cognition. These recordings are exclusively performed in medical centers during diagnostic or therapeutic procedures. The presence of medical instruments along with other aspects of the hospital environment limit the control of electrical noise compared to animal laboratory environments. Here, we highlight the problem of an increased occurrence of simultaneous spike events on different recording channels in human single-unit recordings. Most of these simultaneous events were detected in clusters previously labeled as artifacts and showed similar waveforms. These events may result from common external noise sources or from different micro-electrodes recording activity from the same neuron. To address the problem of duplicate recorded events, we introduce an open-source algorithm to identify these artificial spike events based on their synchronicity and waveform similarity. Applying our method to a comprehensive dataset of human single-unit recordings, we demonstrate that our algorithm can substantially increase the data quality of these recordings. Given our findings, we argue that future studies of single-unit activity recorded under noisy conditions should employ algorithms of this kind to improve data quality. MDPI 2021-06-08 /pmc/articles/PMC8228483/ /pubmed/34201115 http://dx.doi.org/10.3390/brainsci11060761 Text en © 2021 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Article Dehnen, Gert Kehl, Marcel S. Darcher, Alana Müller, Tamara T. Macke, Jakob H. Borger, Valeri Surges, Rainer Mormann, Florian Duplicate Detection of Spike Events: A Relevant Problem in Human Single-Unit Recordings |
title | Duplicate Detection of Spike Events: A Relevant Problem in Human Single-Unit Recordings |
title_full | Duplicate Detection of Spike Events: A Relevant Problem in Human Single-Unit Recordings |
title_fullStr | Duplicate Detection of Spike Events: A Relevant Problem in Human Single-Unit Recordings |
title_full_unstemmed | Duplicate Detection of Spike Events: A Relevant Problem in Human Single-Unit Recordings |
title_short | Duplicate Detection of Spike Events: A Relevant Problem in Human Single-Unit Recordings |
title_sort | duplicate detection of spike events: a relevant problem in human single-unit recordings |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8228483/ https://www.ncbi.nlm.nih.gov/pubmed/34201115 http://dx.doi.org/10.3390/brainsci11060761 |
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