Characterization of the complete chloroplast genome of mangrove Bruguiera gymnorrhiza (L.) Lam. ex Savigny

The chloroplast (cp) genome sequence of Bruguiera gymnorrhiza was characterized. The cp genome length was 163,795 bp in length, with a GC content of 35.3%, containing a large single copy (LSC) of 90,830 bp, a small single copy (SSC) of 20,207 bp, and a pair of inverted repeats (IRs) of 26,379 bp. Th...

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Autores principales: Li, Su-Yuan, Li, Yi-Chan, Zhang, Tian-Hao, Qin, Lan-Li, An, Yi-Dong, Pang, Yu-Kun, Jiang, Guo-Feng
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2021
Materias:
Mitogenome Announcement
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8231343/
https://www.ncbi.nlm.nih.gov/pubmed/34222660
http://dx.doi.org/10.1080/23802359.2021.1914220
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author Li, Su-Yuan
Li, Yi-Chan
Zhang, Tian-Hao
Qin, Lan-Li
An, Yi-Dong
Pang, Yu-Kun
Jiang, Guo-Feng
author_facet Li, Su-Yuan
Li, Yi-Chan
Zhang, Tian-Hao
Qin, Lan-Li
An, Yi-Dong
Pang, Yu-Kun
Jiang, Guo-Feng
author_sort Li, Su-Yuan
collection PubMed
description The chloroplast (cp) genome sequence of Bruguiera gymnorrhiza was characterized. The cp genome length was 163,795 bp in length, with a GC content of 35.3%, containing a large single copy (LSC) of 90,830 bp, a small single copy (SSC) of 20,207 bp, and a pair of inverted repeats (IRs) of 26,379 bp. The genome contained 121 genes, including 84 protein-coding genes, 37 tRNA genes, and 8 rRNA genes. A phylogenetic analysis using cp genomes of mangroves and ecologically associated species resolved B. gymnorrhiza in Bruguiera with B. sexangula var. rhynchopetala. This complete chloroplast sequence offers a promising tool for further species identification and evolutionary studies of Bruguiera, as well as for mangroves.
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spelling pubmed-82313432021-07-01 Characterization of the complete chloroplast genome of mangrove Bruguiera gymnorrhiza (L.) Lam. ex Savigny Li, Su-Yuan Li, Yi-Chan Zhang, Tian-Hao Qin, Lan-Li An, Yi-Dong Pang, Yu-Kun Jiang, Guo-Feng Mitochondrial DNA B Resour Mitogenome Announcement The chloroplast (cp) genome sequence of Bruguiera gymnorrhiza was characterized. The cp genome length was 163,795 bp in length, with a GC content of 35.3%, containing a large single copy (LSC) of 90,830 bp, a small single copy (SSC) of 20,207 bp, and a pair of inverted repeats (IRs) of 26,379 bp. The genome contained 121 genes, including 84 protein-coding genes, 37 tRNA genes, and 8 rRNA genes. A phylogenetic analysis using cp genomes of mangroves and ecologically associated species resolved B. gymnorrhiza in Bruguiera with B. sexangula var. rhynchopetala. This complete chloroplast sequence offers a promising tool for further species identification and evolutionary studies of Bruguiera, as well as for mangroves. Taylor & Francis 2021-06-23 /pmc/articles/PMC8231343/ /pubmed/34222660 http://dx.doi.org/10.1080/23802359.2021.1914220 Text en © 2021 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Mitogenome Announcement
Li, Su-Yuan
Li, Yi-Chan
Zhang, Tian-Hao
Qin, Lan-Li
An, Yi-Dong
Pang, Yu-Kun
Jiang, Guo-Feng
Characterization of the complete chloroplast genome of mangrove Bruguiera gymnorrhiza (L.) Lam. ex Savigny
title Characterization of the complete chloroplast genome of mangrove Bruguiera gymnorrhiza (L.) Lam. ex Savigny
title_full Characterization of the complete chloroplast genome of mangrove Bruguiera gymnorrhiza (L.) Lam. ex Savigny
title_fullStr Characterization of the complete chloroplast genome of mangrove Bruguiera gymnorrhiza (L.) Lam. ex Savigny
title_full_unstemmed Characterization of the complete chloroplast genome of mangrove Bruguiera gymnorrhiza (L.) Lam. ex Savigny
title_short Characterization of the complete chloroplast genome of mangrove Bruguiera gymnorrhiza (L.) Lam. ex Savigny
title_sort characterization of the complete chloroplast genome of mangrove bruguiera gymnorrhiza (l.) lam. ex savigny
topic Mitogenome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8231343/
https://www.ncbi.nlm.nih.gov/pubmed/34222660
http://dx.doi.org/10.1080/23802359.2021.1914220
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