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BIO-LGCA: A cellular automaton modelling class for analysing collective cell migration
Collective dynamics in multicellular systems such as biological organs and tissues plays a key role in biological development, regeneration, and pathological conditions. Collective tissue dynamics—understood as population behaviour arising from the interplay of the constituting discrete cells—can be...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Public Library of Science
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8232544/ https://www.ncbi.nlm.nih.gov/pubmed/34129639 http://dx.doi.org/10.1371/journal.pcbi.1009066 |
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author | Deutsch, Andreas Nava-Sedeño, Josué Manik Syga, Simon Hatzikirou, Haralampos |
author_facet | Deutsch, Andreas Nava-Sedeño, Josué Manik Syga, Simon Hatzikirou, Haralampos |
author_sort | Deutsch, Andreas |
collection | PubMed |
description | Collective dynamics in multicellular systems such as biological organs and tissues plays a key role in biological development, regeneration, and pathological conditions. Collective tissue dynamics—understood as population behaviour arising from the interplay of the constituting discrete cells—can be studied with on- and off-lattice agent-based models. However, classical on-lattice agent-based models, also known as cellular automata, fail to replicate key aspects of collective migration, which is a central instance of collective behaviour in multicellular systems. To overcome drawbacks of classical on-lattice models, we introduce an on-lattice, agent-based modelling class for collective cell migration, which we call biological lattice-gas cellular automaton (BIO-LGCA). The BIO-LGCA is characterised by synchronous time updates, and the explicit consideration of individual cell velocities. While rules in classical cellular automata are typically chosen ad hoc, rules for cell-cell and cell-environment interactions in the BIO-LGCA can also be derived from experimental cell migration data or biophysical laws for individual cell migration. We introduce elementary BIO-LGCA models of fundamental cell interactions, which may be combined in a modular fashion to model complex multicellular phenomena. We exemplify the mathematical mean-field analysis of specific BIO-LGCA models, which allows to explain collective behaviour. The first example predicts the formation of clusters in adhesively interacting cells. The second example is based on a novel BIO-LGCA combining adhesive interactions and alignment. For this model, our analysis clarifies the nature of the recently discovered invasion plasticity of breast cancer cells in heterogeneous environments. |
format | Online Article Text |
id | pubmed-8232544 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | Public Library of Science |
record_format | MEDLINE/PubMed |
spelling | pubmed-82325442021-07-07 BIO-LGCA: A cellular automaton modelling class for analysing collective cell migration Deutsch, Andreas Nava-Sedeño, Josué Manik Syga, Simon Hatzikirou, Haralampos PLoS Comput Biol Research Article Collective dynamics in multicellular systems such as biological organs and tissues plays a key role in biological development, regeneration, and pathological conditions. Collective tissue dynamics—understood as population behaviour arising from the interplay of the constituting discrete cells—can be studied with on- and off-lattice agent-based models. However, classical on-lattice agent-based models, also known as cellular automata, fail to replicate key aspects of collective migration, which is a central instance of collective behaviour in multicellular systems. To overcome drawbacks of classical on-lattice models, we introduce an on-lattice, agent-based modelling class for collective cell migration, which we call biological lattice-gas cellular automaton (BIO-LGCA). The BIO-LGCA is characterised by synchronous time updates, and the explicit consideration of individual cell velocities. While rules in classical cellular automata are typically chosen ad hoc, rules for cell-cell and cell-environment interactions in the BIO-LGCA can also be derived from experimental cell migration data or biophysical laws for individual cell migration. We introduce elementary BIO-LGCA models of fundamental cell interactions, which may be combined in a modular fashion to model complex multicellular phenomena. We exemplify the mathematical mean-field analysis of specific BIO-LGCA models, which allows to explain collective behaviour. The first example predicts the formation of clusters in adhesively interacting cells. The second example is based on a novel BIO-LGCA combining adhesive interactions and alignment. For this model, our analysis clarifies the nature of the recently discovered invasion plasticity of breast cancer cells in heterogeneous environments. Public Library of Science 2021-06-15 /pmc/articles/PMC8232544/ /pubmed/34129639 http://dx.doi.org/10.1371/journal.pcbi.1009066 Text en © 2021 Deutsch et al https://creativecommons.org/licenses/by/4.0/This is an open access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. |
spellingShingle | Research Article Deutsch, Andreas Nava-Sedeño, Josué Manik Syga, Simon Hatzikirou, Haralampos BIO-LGCA: A cellular automaton modelling class for analysing collective cell migration |
title | BIO-LGCA: A cellular automaton modelling class for analysing collective cell migration |
title_full | BIO-LGCA: A cellular automaton modelling class for analysing collective cell migration |
title_fullStr | BIO-LGCA: A cellular automaton modelling class for analysing collective cell migration |
title_full_unstemmed | BIO-LGCA: A cellular automaton modelling class for analysing collective cell migration |
title_short | BIO-LGCA: A cellular automaton modelling class for analysing collective cell migration |
title_sort | bio-lgca: a cellular automaton modelling class for analysing collective cell migration |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8232544/ https://www.ncbi.nlm.nih.gov/pubmed/34129639 http://dx.doi.org/10.1371/journal.pcbi.1009066 |
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