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A novel dynamic network imaging analysis method reveals aging-related fragmentation of cortical networks in mouse
Network analysis of large-scale neuroimaging data is a particularly challenging computational problem. Here, we adapt a novel analytical tool, the community dynamic inference method (CommDy), for brain imaging data from young and aged mice. CommDy, which was inspired by social network theory, has be...
Autores principales: | , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
MIT Press
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8233117/ https://www.ncbi.nlm.nih.gov/pubmed/34189378 http://dx.doi.org/10.1162/netn_a_00191 |
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author | Llano, Daniel A. Ma, Chihua Di Fabrizio, Umberto Taheri, Aynaz Stebbings, Kevin A. Yudintsev, Georgiy Xiao, Gang Kenyon, Robert V. Berger-Wolf, Tanya Y. |
author_facet | Llano, Daniel A. Ma, Chihua Di Fabrizio, Umberto Taheri, Aynaz Stebbings, Kevin A. Yudintsev, Georgiy Xiao, Gang Kenyon, Robert V. Berger-Wolf, Tanya Y. |
author_sort | Llano, Daniel A. |
collection | PubMed |
description | Network analysis of large-scale neuroimaging data is a particularly challenging computational problem. Here, we adapt a novel analytical tool, the community dynamic inference method (CommDy), for brain imaging data from young and aged mice. CommDy, which was inspired by social network theory, has been successfully used in other domains in biology; this report represents its first use in neuroscience. We used CommDy to investigate aging-related changes in network metrics in the auditory and motor cortices by using flavoprotein autofluorescence imaging in brain slices and in vivo. We observed that auditory cortical networks in slices taken from aged brains were highly fragmented compared to networks observed in young animals. CommDy network metrics were then used to build a random-forests classifier based on NMDA receptor blockade data, which successfully reproduced the aging findings, suggesting that the excitatory cortical connections may be altered during aging. A similar aging-related decline in network connectivity was also observed in spontaneous activity in the awake motor cortex, suggesting that the findings in the auditory cortex reflect general mechanisms during aging. These data suggest that CommDy provides a new dynamic network analytical tool to study the brain and that aging is associated with fragmentation of intracortical networks. |
format | Online Article Text |
id | pubmed-8233117 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | MIT Press |
record_format | MEDLINE/PubMed |
spelling | pubmed-82331172021-06-28 A novel dynamic network imaging analysis method reveals aging-related fragmentation of cortical networks in mouse Llano, Daniel A. Ma, Chihua Di Fabrizio, Umberto Taheri, Aynaz Stebbings, Kevin A. Yudintsev, Georgiy Xiao, Gang Kenyon, Robert V. Berger-Wolf, Tanya Y. Netw Neurosci Research Article Network analysis of large-scale neuroimaging data is a particularly challenging computational problem. Here, we adapt a novel analytical tool, the community dynamic inference method (CommDy), for brain imaging data from young and aged mice. CommDy, which was inspired by social network theory, has been successfully used in other domains in biology; this report represents its first use in neuroscience. We used CommDy to investigate aging-related changes in network metrics in the auditory and motor cortices by using flavoprotein autofluorescence imaging in brain slices and in vivo. We observed that auditory cortical networks in slices taken from aged brains were highly fragmented compared to networks observed in young animals. CommDy network metrics were then used to build a random-forests classifier based on NMDA receptor blockade data, which successfully reproduced the aging findings, suggesting that the excitatory cortical connections may be altered during aging. A similar aging-related decline in network connectivity was also observed in spontaneous activity in the awake motor cortex, suggesting that the findings in the auditory cortex reflect general mechanisms during aging. These data suggest that CommDy provides a new dynamic network analytical tool to study the brain and that aging is associated with fragmentation of intracortical networks. MIT Press 2021-06-21 /pmc/articles/PMC8233117/ /pubmed/34189378 http://dx.doi.org/10.1162/netn_a_00191 Text en © 2021 Massachusetts Institute of Technology https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution 4.0 International License (https://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. For a full description of the license, please visit https://creativecommons.org/licenses/by/4.0/legalcode (https://creativecommons.org/licenses/by/4.0/) . |
spellingShingle | Research Article Llano, Daniel A. Ma, Chihua Di Fabrizio, Umberto Taheri, Aynaz Stebbings, Kevin A. Yudintsev, Georgiy Xiao, Gang Kenyon, Robert V. Berger-Wolf, Tanya Y. A novel dynamic network imaging analysis method reveals aging-related fragmentation of cortical networks in mouse |
title | A novel dynamic network imaging analysis method reveals aging-related fragmentation of cortical networks in mouse |
title_full | A novel dynamic network imaging analysis method reveals aging-related fragmentation of cortical networks in mouse |
title_fullStr | A novel dynamic network imaging analysis method reveals aging-related fragmentation of cortical networks in mouse |
title_full_unstemmed | A novel dynamic network imaging analysis method reveals aging-related fragmentation of cortical networks in mouse |
title_short | A novel dynamic network imaging analysis method reveals aging-related fragmentation of cortical networks in mouse |
title_sort | novel dynamic network imaging analysis method reveals aging-related fragmentation of cortical networks in mouse |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8233117/ https://www.ncbi.nlm.nih.gov/pubmed/34189378 http://dx.doi.org/10.1162/netn_a_00191 |
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