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Further Validation of Quantum Crystallography Approaches

Quantum crystallography is a fast-developing multidisciplinary area of crystallography. In this work, we analyse the influence of different charge density models (i.e., the multipole model (MM), Hirshfeld atom refinement (HAR), and the transferable aspherical atom model (TAAM)), modelling of the the...

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Autores principales: Wanat, Monika, Malinska, Maura, Hoser, Anna A., Woźniak, Krzysztof
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8233966/
https://www.ncbi.nlm.nih.gov/pubmed/34207308
http://dx.doi.org/10.3390/molecules26123730
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author Wanat, Monika
Malinska, Maura
Hoser, Anna A.
Woźniak, Krzysztof
author_facet Wanat, Monika
Malinska, Maura
Hoser, Anna A.
Woźniak, Krzysztof
author_sort Wanat, Monika
collection PubMed
description Quantum crystallography is a fast-developing multidisciplinary area of crystallography. In this work, we analyse the influence of different charge density models (i.e., the multipole model (MM), Hirshfeld atom refinement (HAR), and the transferable aspherical atom model (TAAM)), modelling of the thermal motion of hydrogen atoms (anisotropic, isotropic, and with the aid of SHADE or NoMoRe), and the type of radiation used (Mo Kα and Cu Kα) on the final results. To achieve this aim, we performed a series of refinements against X-ray diffraction data for three model compounds and compared their final structures, geometries, shapes of ADPs, and charge density distributions. Our results were also supported by theoretical calculations that enabled comparisons of the lattice energies of these structures. It appears that geometrical parameters are better described (closer to the neutron values) when HAR is used; however, bonds to H atoms more closely match neutron values after MM or TAAM refinement. Our analysis shows the superiority of the NoMoRe method in the description of H-atom ADPs. Moreover, the shapes of the ADPs of H atoms, as well as their electron density distributions, were better described with low-resolution Cu Kα data in comparison to low-resolution Mo Kα data.
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spelling pubmed-82339662021-06-27 Further Validation of Quantum Crystallography Approaches Wanat, Monika Malinska, Maura Hoser, Anna A. Woźniak, Krzysztof Molecules Article Quantum crystallography is a fast-developing multidisciplinary area of crystallography. In this work, we analyse the influence of different charge density models (i.e., the multipole model (MM), Hirshfeld atom refinement (HAR), and the transferable aspherical atom model (TAAM)), modelling of the thermal motion of hydrogen atoms (anisotropic, isotropic, and with the aid of SHADE or NoMoRe), and the type of radiation used (Mo Kα and Cu Kα) on the final results. To achieve this aim, we performed a series of refinements against X-ray diffraction data for three model compounds and compared their final structures, geometries, shapes of ADPs, and charge density distributions. Our results were also supported by theoretical calculations that enabled comparisons of the lattice energies of these structures. It appears that geometrical parameters are better described (closer to the neutron values) when HAR is used; however, bonds to H atoms more closely match neutron values after MM or TAAM refinement. Our analysis shows the superiority of the NoMoRe method in the description of H-atom ADPs. Moreover, the shapes of the ADPs of H atoms, as well as their electron density distributions, were better described with low-resolution Cu Kα data in comparison to low-resolution Mo Kα data. MDPI 2021-06-18 /pmc/articles/PMC8233966/ /pubmed/34207308 http://dx.doi.org/10.3390/molecules26123730 Text en © 2021 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Wanat, Monika
Malinska, Maura
Hoser, Anna A.
Woźniak, Krzysztof
Further Validation of Quantum Crystallography Approaches
title Further Validation of Quantum Crystallography Approaches
title_full Further Validation of Quantum Crystallography Approaches
title_fullStr Further Validation of Quantum Crystallography Approaches
title_full_unstemmed Further Validation of Quantum Crystallography Approaches
title_short Further Validation of Quantum Crystallography Approaches
title_sort further validation of quantum crystallography approaches
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8233966/
https://www.ncbi.nlm.nih.gov/pubmed/34207308
http://dx.doi.org/10.3390/molecules26123730
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