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Using NLP in openEHR archetypes retrieval to promote interoperability: a feasibility study in China

BACKGROUND: With the development and application of medical information system, semantic interoperability is essential for accurate and advanced health-related computing and electronic health record (EHR) information sharing. The openEHR approach can improve semantic interoperability. One key improv...

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Autores principales: Sun, Bo, Zhang, Fei, Li, Jing, Yang, Yicheng, Diao, Xiaolin, Zhao, Wei, Shu, Ting
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8234679/
https://www.ncbi.nlm.nih.gov/pubmed/34174874
http://dx.doi.org/10.1186/s12911-021-01554-2
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author Sun, Bo
Zhang, Fei
Li, Jing
Yang, Yicheng
Diao, Xiaolin
Zhao, Wei
Shu, Ting
author_facet Sun, Bo
Zhang, Fei
Li, Jing
Yang, Yicheng
Diao, Xiaolin
Zhao, Wei
Shu, Ting
author_sort Sun, Bo
collection PubMed
description BACKGROUND: With the development and application of medical information system, semantic interoperability is essential for accurate and advanced health-related computing and electronic health record (EHR) information sharing. The openEHR approach can improve semantic interoperability. One key improvement of openEHR is that it allows for the use of existing archetypes. The crucial problem is how to improve the precision and resolve ambiguity in the archetype retrieval. METHOD: Based on the query expansion technology and Word2Vec model in Nature Language Processing (NLP), we propose to find synonyms as substitutes for original search terms in archetype retrieval. Test sets in different medical professional level are used to verify the feasibility. RESULT: Applying the approach to each original search term (n = 120) in test sets, a total of 69,348 substitutes were constructed. Precision at 5 (P@5) was improved by 0.767, on average. For the best result, the P@5 was up to 0.975. CONCLUSIONS: We introduce a novel approach that using NLP technology and corpus to find synonyms as substitutes for original search terms. Compared to simply mapping the element contained in openEHR to an external dictionary, this approach could greatly improve precision and resolve ambiguity in retrieval tasks. This is helpful to promote the application of openEHR and advance EHR information sharing.
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spelling pubmed-82346792021-06-28 Using NLP in openEHR archetypes retrieval to promote interoperability: a feasibility study in China Sun, Bo Zhang, Fei Li, Jing Yang, Yicheng Diao, Xiaolin Zhao, Wei Shu, Ting BMC Med Inform Decis Mak Research Article BACKGROUND: With the development and application of medical information system, semantic interoperability is essential for accurate and advanced health-related computing and electronic health record (EHR) information sharing. The openEHR approach can improve semantic interoperability. One key improvement of openEHR is that it allows for the use of existing archetypes. The crucial problem is how to improve the precision and resolve ambiguity in the archetype retrieval. METHOD: Based on the query expansion technology and Word2Vec model in Nature Language Processing (NLP), we propose to find synonyms as substitutes for original search terms in archetype retrieval. Test sets in different medical professional level are used to verify the feasibility. RESULT: Applying the approach to each original search term (n = 120) in test sets, a total of 69,348 substitutes were constructed. Precision at 5 (P@5) was improved by 0.767, on average. For the best result, the P@5 was up to 0.975. CONCLUSIONS: We introduce a novel approach that using NLP technology and corpus to find synonyms as substitutes for original search terms. Compared to simply mapping the element contained in openEHR to an external dictionary, this approach could greatly improve precision and resolve ambiguity in retrieval tasks. This is helpful to promote the application of openEHR and advance EHR information sharing. BioMed Central 2021-06-26 /pmc/articles/PMC8234679/ /pubmed/34174874 http://dx.doi.org/10.1186/s12911-021-01554-2 Text en © The Author(s) 2021 https://creativecommons.org/licenses/by/4.0/Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/ (https://creativecommons.org/publicdomain/zero/1.0/) ) applies to the data made available in this article, unless otherwise stated in a credit line to the data.
spellingShingle Research Article
Sun, Bo
Zhang, Fei
Li, Jing
Yang, Yicheng
Diao, Xiaolin
Zhao, Wei
Shu, Ting
Using NLP in openEHR archetypes retrieval to promote interoperability: a feasibility study in China
title Using NLP in openEHR archetypes retrieval to promote interoperability: a feasibility study in China
title_full Using NLP in openEHR archetypes retrieval to promote interoperability: a feasibility study in China
title_fullStr Using NLP in openEHR archetypes retrieval to promote interoperability: a feasibility study in China
title_full_unstemmed Using NLP in openEHR archetypes retrieval to promote interoperability: a feasibility study in China
title_short Using NLP in openEHR archetypes retrieval to promote interoperability: a feasibility study in China
title_sort using nlp in openehr archetypes retrieval to promote interoperability: a feasibility study in china
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8234679/
https://www.ncbi.nlm.nih.gov/pubmed/34174874
http://dx.doi.org/10.1186/s12911-021-01554-2
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