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Feasibility of melting fingerprint obtained from ISSR-HRM curves for marine mammal species identification

Currently, species identification of stranded marine mammals mostly relies on morphological features, which has inherent challenges. The use of genetic information for marine mammal species identification remains limited, therefore, new approaches that can contribute to a better monitoring of strand...

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Autores principales: Kriangwanich, Wannapimol, Buddhachat, Kittisak, Poommouang, Anocha, Chomdej, Siriwadee, Thitaram, Chatchote, Kaewmong, Patcharaporn, Kittiwattanawong, Kongkiat, Nganvongpanit, Korakot
Formato: Online Artículo Texto
Lenguaje:English
Publicado: PeerJ Inc. 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8237827/
https://www.ncbi.nlm.nih.gov/pubmed/34239781
http://dx.doi.org/10.7717/peerj.11689
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author Kriangwanich, Wannapimol
Buddhachat, Kittisak
Poommouang, Anocha
Chomdej, Siriwadee
Thitaram, Chatchote
Kaewmong, Patcharaporn
Kittiwattanawong, Kongkiat
Nganvongpanit, Korakot
author_facet Kriangwanich, Wannapimol
Buddhachat, Kittisak
Poommouang, Anocha
Chomdej, Siriwadee
Thitaram, Chatchote
Kaewmong, Patcharaporn
Kittiwattanawong, Kongkiat
Nganvongpanit, Korakot
author_sort Kriangwanich, Wannapimol
collection PubMed
description Currently, species identification of stranded marine mammals mostly relies on morphological features, which has inherent challenges. The use of genetic information for marine mammal species identification remains limited, therefore, new approaches that can contribute to a better monitoring of stranded species are needed. In that context, the ISSR-HRM method we have proposed offers a new approach for marine mammal species identification. Consequently, new approaches need to be developed to identify individuals at the species level. Eight primers of the ISSR markers were chosen for HRM analysis resulting in ranges of accuracy of 56.78–75.50% and 52.14–75.93% in terms of precision, while a degree of sensitivity of more than 80% was recorded when each single primer was used. The ISSR-HRM primer combinations revealed a success rate of 100% in terms of discrimination for all marine mammals included in this study. Furthermore, ISSR-HRM analysis was successfully employed in determining marine mammal discrimination among varying marine mammal species. Thus, ISSR-HRM analysis could serve as an effective alternative tool in the species identification process. This option would offer researchers a heightened level of convenience in terms of its performance and success rate. It would also offer field practice to veterinarians, biologists and other field-related people a greater degree of ease with which they could interpret results when effectively classifying stranded marine mammals. However, further studies with more samples and with a broader geographical scope will be required involving distinct populations to account for the high degree of intraspecific variability in cetaceans and to demonstrate the range of applications of this approach.
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spelling pubmed-82378272021-07-07 Feasibility of melting fingerprint obtained from ISSR-HRM curves for marine mammal species identification Kriangwanich, Wannapimol Buddhachat, Kittisak Poommouang, Anocha Chomdej, Siriwadee Thitaram, Chatchote Kaewmong, Patcharaporn Kittiwattanawong, Kongkiat Nganvongpanit, Korakot PeerJ Biotechnology Currently, species identification of stranded marine mammals mostly relies on morphological features, which has inherent challenges. The use of genetic information for marine mammal species identification remains limited, therefore, new approaches that can contribute to a better monitoring of stranded species are needed. In that context, the ISSR-HRM method we have proposed offers a new approach for marine mammal species identification. Consequently, new approaches need to be developed to identify individuals at the species level. Eight primers of the ISSR markers were chosen for HRM analysis resulting in ranges of accuracy of 56.78–75.50% and 52.14–75.93% in terms of precision, while a degree of sensitivity of more than 80% was recorded when each single primer was used. The ISSR-HRM primer combinations revealed a success rate of 100% in terms of discrimination for all marine mammals included in this study. Furthermore, ISSR-HRM analysis was successfully employed in determining marine mammal discrimination among varying marine mammal species. Thus, ISSR-HRM analysis could serve as an effective alternative tool in the species identification process. This option would offer researchers a heightened level of convenience in terms of its performance and success rate. It would also offer field practice to veterinarians, biologists and other field-related people a greater degree of ease with which they could interpret results when effectively classifying stranded marine mammals. However, further studies with more samples and with a broader geographical scope will be required involving distinct populations to account for the high degree of intraspecific variability in cetaceans and to demonstrate the range of applications of this approach. PeerJ Inc. 2021-06-25 /pmc/articles/PMC8237827/ /pubmed/34239781 http://dx.doi.org/10.7717/peerj.11689 Text en © 2021 Kriangwanich et al., https://creativecommons.org/licenses/by/4.0/This is an open access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, reproduction and adaptation in any medium and for any purpose provided that it is properly attributed. For attribution, the original author(s), title, publication source (PeerJ) and either DOI or URL of the article must be cited.
spellingShingle Biotechnology
Kriangwanich, Wannapimol
Buddhachat, Kittisak
Poommouang, Anocha
Chomdej, Siriwadee
Thitaram, Chatchote
Kaewmong, Patcharaporn
Kittiwattanawong, Kongkiat
Nganvongpanit, Korakot
Feasibility of melting fingerprint obtained from ISSR-HRM curves for marine mammal species identification
title Feasibility of melting fingerprint obtained from ISSR-HRM curves for marine mammal species identification
title_full Feasibility of melting fingerprint obtained from ISSR-HRM curves for marine mammal species identification
title_fullStr Feasibility of melting fingerprint obtained from ISSR-HRM curves for marine mammal species identification
title_full_unstemmed Feasibility of melting fingerprint obtained from ISSR-HRM curves for marine mammal species identification
title_short Feasibility of melting fingerprint obtained from ISSR-HRM curves for marine mammal species identification
title_sort feasibility of melting fingerprint obtained from issr-hrm curves for marine mammal species identification
topic Biotechnology
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8237827/
https://www.ncbi.nlm.nih.gov/pubmed/34239781
http://dx.doi.org/10.7717/peerj.11689
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