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Development of an Immune-Related LncRNA Prognostic Signature for Glioma

INTRODUCTION: Glioma is the most common primary cancer of the central nervous system with dismal prognosis. Long noncoding RNAs (lncRNAs) have been discovered to play key roles in tumorigenesis in various cancers, including glioma. Because of the relevance between immune infiltrating and clinical ou...

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Autores principales: Cao, Yudong, Zhu, Hecheng, Tan, Jun, Yin, Wen, Zhou, Quanwei, Xin, Zhaoqi, Wu, Zhaoping, Jiang, Zhipeng, Guo, Youwei, Kuang, Yirui, Li, Can, Zhao, Ming, Jiang, Xingjun, Peng, Jiahui, Ren, Caiping
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8238205/
https://www.ncbi.nlm.nih.gov/pubmed/34194477
http://dx.doi.org/10.3389/fgene.2021.678436
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author Cao, Yudong
Zhu, Hecheng
Tan, Jun
Yin, Wen
Zhou, Quanwei
Xin, Zhaoqi
Wu, Zhaoping
Jiang, Zhipeng
Guo, Youwei
Kuang, Yirui
Li, Can
Zhao, Ming
Jiang, Xingjun
Peng, Jiahui
Ren, Caiping
author_facet Cao, Yudong
Zhu, Hecheng
Tan, Jun
Yin, Wen
Zhou, Quanwei
Xin, Zhaoqi
Wu, Zhaoping
Jiang, Zhipeng
Guo, Youwei
Kuang, Yirui
Li, Can
Zhao, Ming
Jiang, Xingjun
Peng, Jiahui
Ren, Caiping
author_sort Cao, Yudong
collection PubMed
description INTRODUCTION: Glioma is the most common primary cancer of the central nervous system with dismal prognosis. Long noncoding RNAs (lncRNAs) have been discovered to play key roles in tumorigenesis in various cancers, including glioma. Because of the relevance between immune infiltrating and clinical outcome of glioma, identifying immune-related lncRNAs is urgent for better personalized management. MATERIALS AND METHODS: Single-sample gene set enrichment analysis (ssGSEA) was applied to estimate immune infiltration, and glioma samples were divided into high immune cell infiltration group and low immune cell infiltration group. After screening differentially expressed lncRNAs in two immune groups, least absolute shrinkage and selection operator (LASSO) Cox regression analysis was performed to construct an immune-related prognostic signature. Additionally, we explored the correlation between immune infiltration and the prognostic signature. RESULTS: A total of 653 samples were appropriate for further analyses, and 10 lncRNAs were identified as immune-related lncRNAs in glioma. After univariate Cox regression and LASSO Cox regression analysis, six lncRNAs were identified to construct a prognostic signature for glioma, which could be taken as independent prognostic factors in both univariate and multivariate Cox regression analyses. Moreover, risk score was significantly correlated with all the 29 immune-related checkpoint expression (p < 0.05) in ssGSEA except neutrophils (p = 0.43). CONCLUSION: The study constructed an immune-related prognostic signature for glioma, which contributed to improve clinical outcome prediction and guide immunotherapy.
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spelling pubmed-82382052021-06-29 Development of an Immune-Related LncRNA Prognostic Signature for Glioma Cao, Yudong Zhu, Hecheng Tan, Jun Yin, Wen Zhou, Quanwei Xin, Zhaoqi Wu, Zhaoping Jiang, Zhipeng Guo, Youwei Kuang, Yirui Li, Can Zhao, Ming Jiang, Xingjun Peng, Jiahui Ren, Caiping Front Genet Genetics INTRODUCTION: Glioma is the most common primary cancer of the central nervous system with dismal prognosis. Long noncoding RNAs (lncRNAs) have been discovered to play key roles in tumorigenesis in various cancers, including glioma. Because of the relevance between immune infiltrating and clinical outcome of glioma, identifying immune-related lncRNAs is urgent for better personalized management. MATERIALS AND METHODS: Single-sample gene set enrichment analysis (ssGSEA) was applied to estimate immune infiltration, and glioma samples were divided into high immune cell infiltration group and low immune cell infiltration group. After screening differentially expressed lncRNAs in two immune groups, least absolute shrinkage and selection operator (LASSO) Cox regression analysis was performed to construct an immune-related prognostic signature. Additionally, we explored the correlation between immune infiltration and the prognostic signature. RESULTS: A total of 653 samples were appropriate for further analyses, and 10 lncRNAs were identified as immune-related lncRNAs in glioma. After univariate Cox regression and LASSO Cox regression analysis, six lncRNAs were identified to construct a prognostic signature for glioma, which could be taken as independent prognostic factors in both univariate and multivariate Cox regression analyses. Moreover, risk score was significantly correlated with all the 29 immune-related checkpoint expression (p < 0.05) in ssGSEA except neutrophils (p = 0.43). CONCLUSION: The study constructed an immune-related prognostic signature for glioma, which contributed to improve clinical outcome prediction and guide immunotherapy. Frontiers Media S.A. 2021-06-14 /pmc/articles/PMC8238205/ /pubmed/34194477 http://dx.doi.org/10.3389/fgene.2021.678436 Text en Copyright © 2021 Cao, Zhu, Tan, Yin, Zhou, Xin, Wu, Jiang, Guo, Kuang, Li, Zhao, Jiang, Peng and Ren. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Genetics
Cao, Yudong
Zhu, Hecheng
Tan, Jun
Yin, Wen
Zhou, Quanwei
Xin, Zhaoqi
Wu, Zhaoping
Jiang, Zhipeng
Guo, Youwei
Kuang, Yirui
Li, Can
Zhao, Ming
Jiang, Xingjun
Peng, Jiahui
Ren, Caiping
Development of an Immune-Related LncRNA Prognostic Signature for Glioma
title Development of an Immune-Related LncRNA Prognostic Signature for Glioma
title_full Development of an Immune-Related LncRNA Prognostic Signature for Glioma
title_fullStr Development of an Immune-Related LncRNA Prognostic Signature for Glioma
title_full_unstemmed Development of an Immune-Related LncRNA Prognostic Signature for Glioma
title_short Development of an Immune-Related LncRNA Prognostic Signature for Glioma
title_sort development of an immune-related lncrna prognostic signature for glioma
topic Genetics
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8238205/
https://www.ncbi.nlm.nih.gov/pubmed/34194477
http://dx.doi.org/10.3389/fgene.2021.678436
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